PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015878435.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 595aa MW: 69744.4 Da PI: 8.2577

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015878435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.7	7.8e-23	34	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +fYn+YA+e+GFs r+s+sk++k ++e ++++fvC keg+++e+ +k +++ +r+r r+gCkak++v k++ +w v+++++eHn + XP_015878435.1 34 QFYNAYARECGFSARMSTSKRKKGTNELIWKQFVCFKEGETNEHYQKkekhtvQRSGERNRGLVRVGCKAKMTVVKSQtGPNWIVSQFVEEHNYA 128 6************************************99988777778877777888*********999988799**********99 PP FAR1 89 la 90 la XP_015878435.1 129 LA 130 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-20	34	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.7E-30	251	344	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.398	530	568	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-5	543	570	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	6.8E-7	544	562	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MLDDTGTQLY TPQVVEQKKP NVKQEFQTIE EAFQFYNAYA RECGFSARMS TSKRKKGTNE 60 LIWKQFVCFK EGETNEHYQK KEKHTVQRSG ERNRGLVRVG CKAKMTVVKS QTGPNWIVSQ 120 FVEEHNYALA TPSKIHLLRS HRVVSAAKRG LSQQLSEANI PMCQQIRVLE IEADGPQNIG 180 CVEKDIRNYG QRVRDKQKDN DAELLIEFFS SEEEKNPTFY FKCELDEESR LVRCFWADPF 240 ARRSYHFFGD VVVFDTTYNT NKYDMIFAPL AGVNHHGQTV IFGCALLSGE KTEFFIWLFN 300 QLLDVMPRGA PQVIITDQDP TMTKDIAQVL PSTCHRYCIW HILNKFAENI NTMVYRDNYH 360 WFKNIICNSE TIEEFETSWA ELLKNSNLGD NTWLRQMYEI RNKWVSVYFN HIFNAGMLSS 420 QRAESSHAFF KRYISNKNSL MDFIVCFNRA INHQRHDELV VDHIDVNEQP KLKTMCPMET 480 QMVKIYTKRN FIIFQDELFE SSAYFLSCTF EDDESMFYSV RKANGSCSSR NRQLKYNKLS 540 DSVSCSCRLF NFNGIPCRHI LAYFRIKQVM FLPSEYILRR WTKSAKIGKV WDNNG

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MLDDTGTQLY TPQVVEQKKP NVKQEFQTIE EAFQFYNAYA RECGFSARMS TSKRKKGTNE  60
LIWKQFVCFK EGETNEHYQK KEKHTVQRSG ERNRGLVRVG CKAKMTVVKS QTGPNWIVSQ  120
FVEEHNYALA TPSKIHLLRS HRVVSAAKRG LSQQLSEANI PMCQQIRVLE IEADGPQNIG  180
CVEKDIRNYG QRVRDKQKDN DAELLIEFFS SEEEKNPTFY FKCELDEESR LVRCFWADPF  240
ARRSYHFFGD VVVFDTTYNT NKYDMIFAPL AGVNHHGQTV IFGCALLSGE KTEFFIWLFN  300
QLLDVMPRGA PQVIITDQDP TMTKDIAQVL PSTCHRYCIW HILNKFAENI NTMVYRDNYH  360
WFKNIICNSE TIEEFETSWA ELLKNSNLGD NTWLRQMYEI RNKWVSVYFN HIFNAGMLSS  420
QRAESSHAFF KRYISNKNSL MDFIVCFNRA INHQRHDELV VDHIDVNEQP KLKTMCPMET  480
QMVKIYTKRN FIIFQDELFE SSAYFLSCTF EDDESMFYSV RKANGSCSSR NRQLKYNKLS  540
DSVSCSCRLF NFNGIPCRHI LAYFRIKQVM FLPSEYILRR WTKSAKIGKV WDNNG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015878435.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015878435.1	0.0	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-126	FAR1-related sequence 5