PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878398.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 318aa    MW: 34881.2 Da    PI: 9.3615
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-1260104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_015878398.1  60 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 104
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-1654110IPR009057Homeodomain-like
PROSITE profilePS5129414.1855109IPR017930Myb domain
TIGRFAMsTIGR015571.5E-1858107IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.5E-658110IPR009057Homeodomain-like
SMARTSM007176.5E-1059107IPR001005SANT/Myb domain
PfamPF002494.7E-1060104IPR001005SANT/Myb domain
CDDcd001671.22E-762105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVSKNPNPAE GFFLDPNGMA LPGLGPFATI TATATTASTS SSSEDLSKKI RKPYTITKSR  60
ESWTEPEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTSEHLPPP  120
RPKRKAAHPY PQKASKNALT QLSGAFQSSS ALVEPGCVQM PDSSTVHRSP ITGAAISTWT  180
NNSAQTVNVS NGTKVPTVAN NCCSSTESTP RIRPPGETTD QGNNNHPLRV LPDFSQVYSF  240
IGSVFDPGAR DHLQKLKKMD PIDVETVLLL MRNLSINLTS PDFEDHRRLL SSYETDSETT  300
NNSGANKIIN NDRPMNVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878398.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878398.10.0protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-139RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2P5FGQ11e-179A0A2P5FGQ1_TREOI; GAMYB transcription factor
STRINGXP_002513646.11e-166(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-123MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]