PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015878191.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

WRKY

Protein Properties

Length: 391aa MW: 43607.6 Da PI: 6.3217

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015878191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.4	7.1e-29	136	197	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt++ +C ++k+v+rs++dp+++eitY+g+H+++ XP_015878191.1 136 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqHCFATKQVQRSDKDPTIFEITYRGKHTCT 197 59*************************98889************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	21.999	131	194	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.7E-28	133	198	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-25	135	198	IPR003657	WRKY domain
SMART	SM00774	1.0E-38	136	198	IPR003657	WRKY domain
Pfam	PF03106	4.2E-26	137	196	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MENMGDWEQK NLVNELTQGR ELARQLQIHL NVPSSSYETR EFLVQKILVS YEKALSMIHG 60 SISSAGEITQ PTAAGTSTLA IRKSESPPSL NGSPRSDQDS DHDQDFNRDA SRKRKSLPRW 120 TQQVRVSPGM GLEGPLDDGF SWRKYGQKDI LGAKYPRGYY RCTHRNVQHC FATKQVQRSD 180 KDPTIFEITY RGKHTCTQSS RIVPPSSSSQ QQQQHDQTQE PNNSSGSSME PHQQQQNYQT 240 VTAEQNQKQT HDVLSNFRAG LRVITEDLEK INRDHDPQSF SSFHFPLKTE IGDGYFSSIM 300 ETSFVGGFSS SPSFISPATS GTNFFSVSSQ GGINNHDQFG GNNQDLQTGF ESDEKISVPI 360 TSATNSPTVG TDPFPFDPNF AFDNAGHGFF S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MENMGDWEQK NLVNELTQGR ELARQLQIHL NVPSSSYETR EFLVQKILVS YEKALSMIHG  60
SISSAGEITQ PTAAGTSTLA IRKSESPPSL NGSPRSDQDS DHDQDFNRDA SRKRKSLPRW  120
TQQVRVSPGM GLEGPLDDGF SWRKYGQKDI LGAKYPRGYY RCTHRNVQHC FATKQVQRSD  180
KDPTIFEITY RGKHTCTQSS RIVPPSSSSQ QQQQHDQTQE PNNSSGSSME PHQQQQNYQT  240
VTAEQNQKQT HDVLSNFRAG LRVITEDLEK INRDHDPQSF SSFHFPLKTE IGDGYFSSIM  300
ETSFVGGFSS SPSFISPATS GTNFFSVSSQ GGINNHDQFG GNNQDLQTGF ESDEKISVPI  360
TSATNSPTVG TDPFPFDPNF AFDNAGHGFF S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	6e-19	136	196	8	68	OsWRKY45
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	115	SRKRKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269\|PubMed:17369373, ECO:0000269\|PubMed:20409006, ECO:0000269\|PubMed:22325892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015878191.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11506370, ECO:0000269\|PubMed:17369373, ECO:0000269\|PubMed:22268143, ECO:0000269\|PubMed:22325892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015878191.1	0.0	probable WRKY transcription factor 53
Swissprot	Q9SUP6	1e-61	WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBL	A0A2I4DDG8	1e-132	A0A2I4DDG8_JUGRE; probable WRKY transcription factor 53
STRING	XP_010097859.1	1e-132	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF493	34	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	1e-60	WRKY family protein

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Chen X, et al. POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Elife, 2017. [PMID:27873573] Nie P, et al. Induced Systemic Resistance against Botrytis cinerea by Bacillus cereus AR156 through a JA/ET- and NPR1-Dependent Signaling Pathway and Activates PAMP-Triggered Immunity in Arabidopsis. Front Plant Sci, 2017. 8: p. 238 [PMID:28293243] Ren Y,Li Y,Jiang Y,Wu B,Miao Y Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis. Mol Plant, 2017. 10(5): p. 749-763 [PMID:28412544] Sarkar S, et al. Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593] Crespo-Salvador Ó,Escamilla-Aguilar M,López-Cruz J,López-Rodas G,González-Bosch C Determination of histone epigenetic marks in Arabidopsis and tomato genes in the early response to Botrytis cinerea. Plant Cell Rep., 2018. 37(1): p. 153-166 [PMID:29119291] Yuan N, et al. STRESS INDUCED FACTOR 2, a Leucine-Rich Repeat Kinase Regulates Basal Plant Pathogen Defense. Plant Physiol., 2018. 176(4): p. 3062-3080 [PMID:29463771]