PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878099.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 303aa    MW: 34188 Da    PI: 7.3237
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878099.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l +++ ++G g+W++++   g+ R +k+c++rw +yl
   XP_015878099.1 15 KGLWSPDEDQRLRNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding551.9e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
   XP_015878099.1  68 RGTFSKQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-22965IPR009057Homeodomain-like
PROSITE profilePS5129418.0041062IPR017930Myb domain
SuperFamilySSF466891.24E-2812109IPR009057Homeodomain-like
SMARTSM007171.6E-101464IPR001005SANT/Myb domain
PfamPF002491.3E-131562IPR001005SANT/Myb domain
CDDcd001671.38E-91862No hitNo description
PROSITE profilePS5129426.55263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2666117IPR009057Homeodomain-like
SMARTSM007171.2E-1667115IPR001005SANT/Myb domain
PfamPF002491.3E-1668113IPR001005SANT/Myb domain
CDDcd001675.36E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGCKSSEKPK PKHRKGLWSP DEDQRLRNYI LKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGT FSKQEEETIL TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVAKA  120
EENDNVLQTK TQYSRSSSEN LDSASPSSGK ETAPISSYES LEQMEKSPTN TDQSVPQLYD  180
FSKEPQRNSN LPPKLIFAEW LSLDHANGGI NFTDNISGPA VPREAFYQNS SFQDIQAHGF  240
LLNEGTLFGG EFQNGFSQGS AAEIFNSQFK FEDQISGSGF VDFVPGVDVC SAHFSMQNDV  300
MYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231111723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878099.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878037.10.0transcription factor LAF1-like
RefseqXP_015878099.10.0transcription factor LAF1-like
SwissprotQ9M0K47e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2P5CZD71e-144A0A2P5CZD7_TREOI; MYB transcription factor
STRINGEOY231731e-128(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-65myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]