PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877995.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 887aa    MW: 102488 Da    PI: 5.6301
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.43.7e-2674160188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     kfYn+YA+ vGFsvrk+  ++sk +g++++r+f+Cskeg+r+++k++  + +++r+etrtgC a++ ++++ dgk+++t++e++HnH+
  XP_015877995.1  74 KFYNKYARLVGFSVRKDWVNRSKVHGQVVSRKFTCSKEGYRRKDKRD-LNVKKHRKETRTGCLAHMIITRQADGKYCITHFESQHNHD 160
                     6*******************************************999.99999**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-2374160IPR004330FAR1 DNA binding domain
PfamPF105515.0E-26284378IPR018289MULE transposase domain
PROSITE profilePS509669.644564600IPR007527Zinc finger, SWIM-type
SMARTSM005759.5E-5575602IPR006564Zinc finger, PMZ-type
PfamPF044342.8E-5577598IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MDRDDDDFES LHESMDVHLK ASNKLDLNVE QDCRSPKVVH ANGAQSILSS KNEDSIDAVL  60
NIGTEFESDE HAYKFYNKYA RLVGFSVRKD WVNRSKVHGQ VVSRKFTCSK EGYRRKDKRD  120
LNVKKHRKET RTGCLAHMII TRQADGKYCI THFESQHNHD NVDLSNAQTL PLRKELGIEQ  180
AAEADSSEEL GPQSKSAFES MNRWFRVRDS LDHFSLDYDN HLPTERTQDM KEGEAGRLMH  240
YFQRQHFENP LFFYALEVDI NDKVSGIFWA DDNMVSDYGH FGDVICLDTV CKTKKDFLPF  300
VQFIGVNHHK QVVIFAAALL YDETIGSFKW LFRTFLEAMS GKKPKVILTD HDATIVEAIN  360
SVLPEADLRI CVWQMYENTL KHLSHVVKDT ESFANDLRSC IYDHKDEEDF IHAWEDMLNR  420
YSLQQNEWMK WMFREREKWA VVYGRNTHFV DMKGSHLGER LFDELRDYLN CDLDALQFFN  480
HFERVLDEQR YKEIEASAEM NRCMPRLMGN VVLLKHASDL YTLRAFEIFQ QGYEKCLNIV  540
VNQCGEDGSL FEYKVNTFGK TREHSVTFNS LDDTVICSCK NFEYVGFLCS HALKVLDQRN  600
IKVLPSRYVL KRWRKDARLG SMGESNKFPM HDNPKLIMAS RYKDLCHRIL LLSAKASESD  660
EAFLFASRQL DELMEGVEKI LKLKPDEAQA VTSSSTGANA SECENTEIFL DENAIEDQDD  720
NRIKLKGQTI LDRGQLINVN EEGSPTERIQ NVEAPPQSTI TCISSSPPVY VSNQDTAGNS  780
MIQGLYNFEA NQAVHCLYQQ PNLALDQQNN PSMYQPSNFF TNQHDSPGQS QLLQEPLIHN  840
TYQESVSNAT QLRQAMDLDV QNPNPSSFLL FDHRYRSSSE TSYLEHK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877995.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_024927900.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_024927901.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLW9RWW40.0W9RWW4_9ROSA; Protein FAR1-RELATED SEQUENCE 5
STRINGXP_010107406.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-112FAR1-related sequence 5