PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877984.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 194aa    MW: 21643.7 Da    PI: 9.0849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-082273154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    ++++h   Er+RR+++    + Lr+ lP+ +    ++K s ++   +Av++I+++
  XP_015877984.1 22 KKMMHRDSERQRRQQMALLNASLRSQLPSeS---IKGKRSVSDHINEAVNHINNM 73
                    6899*************************66...******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-111891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-62178No hitNo description
PROSITE profilePS5088811.8392173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-52273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-92391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLLKLTMSGS DNRRNSSEND KKKMMHRDSE RQRRQQMALL NASLRSQLPS ESIKGKRSVS  60
DHINEAVNHI NNMKNKIEQL TVKKDKLESS SNVSTSTPKS ESSSEKQCLA NSIVIRPFWG  120
GIEIVISRGG LRGKDLPLSC VLEVLVLEEG LNVVRCASTR ANGTLIHTVQ AEVDDINRID  180
LSELQQKLSM CCPD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877984.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877984.11e-139transcription factor bHLH118-like
TrEMBLB9I4H51e-51B9I4H5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14080.12e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-26bHLH family protein