PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015877982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28200.2 Da PI: 10.585 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 5e-12 | 81 | 131 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h +Er RR+++ ++++ Lr+llP + ++K s ++ +Av+YIk Lq XP_015877982.1 81 MKHRDIERLRRQEMATRYASLRSLLPLeL---IKGKRSISDHIIEAVNYIKLLQ 131 68*************************78...*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.87E-8 | 78 | 135 | No hit | No description |
PROSITE profile | PS50888 | 12.913 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-12 | 78 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 81 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-9 | 82 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSSPLHQSNE LVFQISPNPH KKHKISKDLI LGTTPASLDF AVFDDKKKAN NDGWWRQRRK 60 PIAAASLENS TTSINNNKKM MKHRDIERLR RQEMATRYAS LRSLLPLELI KGKRSISDHI 120 IEAVNYIKLL QNKIKKLGSQ RDELKKLSNS ATISDHESRS SSTSPPAAAA ASRLSVQPFG 180 SGVEIIISSS TSSFPLSRVL DVLLQEGLSI VQCFSTTIND KLHHTIHSDR VNNVETINLP 240 SLEKKLTEAI SSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015877982.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015877982.1 | 0.0 | transcription factor bHLH118-like | ||||
TrEMBL | A0A2P5D9K2 | 8e-70 | A0A2P5D9K2_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | XP_008234326.1 | 6e-63 | (Prunus mume) | ||||
STRING | XP_010109067.1 | 1e-62 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 2e-34 | bHLH family protein |