PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015877510.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 389aa MW: 44931.3 Da PI: 8.3588

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015877510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.7e-20	55	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAke+GF+v s++k+ k +++++++fvC keg ++ ++ + ++r r tr +Ckakl v ++k+gk+++t +++eH+H+l+ XP_015877510.1 55 EFYIKYAKEAGFNVHSSSTKRCKGAKKVVRKEFVCFKEGVSSIKDGE---RKRCRGMTRENCKAKLAVVRSKTGKFVITVFVEEHSHPLS 141 6***************************************99877...99999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-18	55	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-32	262	355	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MSVEQLEANS DCRRVEDISL LSHSKSVDDV YIPQVAENRK PKVGQEFESI DGAHEFYIKY 60 AKEAGFNVHS SSTKRCKGAK KVVRKEFVCF KEGVSSIKDG ERKRCRGMTR ENCKAKLAVV 120 RSKTGKFVIT VFVEEHSHPL STPRRVHLLR SHRSVSEAKK SLTLQFSAAN VPTHQQISIL 180 EFEARGIENI GCTKKDIYNH EAKMRNELKG QDAELLKEYF LTEQEKDPCF FFKIDVNDDG 240 KLKRCFWADS VSRRAYGCFG DVVVFDTTYN TNQYGMIFAP LVGVNNHGQT VLFACAFLSD 300 EKTKSFVWLF ELLKDSMPTN KPKMIITDQD PTMTKAIVQS LPNTFHRYCS WHILEKFSTY 360 LNVITYRDFY KDFQQCIWES ECPEEFERK

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MSVEQLEANS DCRRVEDISL LSHSKSVDDV YIPQVAENRK PKVGQEFESI DGAHEFYIKY  60
AKEAGFNVHS SSTKRCKGAK KVVRKEFVCF KEGVSSIKDG ERKRCRGMTR ENCKAKLAVV  120
RSKTGKFVIT VFVEEHSHPL STPRRVHLLR SHRSVSEAKK SLTLQFSAAN VPTHQQISIL  180
EFEARGIENI GCTKKDIYNH EAKMRNELKG QDAELLKEYF LTEQEKDPCF FFKIDVNDDG  240
KLKRCFWADS VSRRAYGCFG DVVVFDTTYN TNQYGMIFAP LVGVNNHGQT VLFACAFLSD  300
EKTKSFVWLF ELLKDSMPTN KPKMIITDQD PTMTKAIVQS LPNTFHRYCS WHILEKFSTY  360
LNVITYRDFY KDFQQCIWES ECPEEFERK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015877510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877510.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-154	A0A067D5X9_CITSI; Uncharacterized protein
STRING	XP_004297991.1	1e-149	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-76	FAR1-related sequence 5