PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015877442.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21039.9 Da PI: 8.4615 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132 | 2.5e-41 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l+++ ee+reda++sl+yeAear+rdPvyG++g i lq+++ +l+++la XP_015877442.1 17 SCAACKFLKRRCIPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVAEEQREDAVNSLAYEAEARLRDPVYGCIGAIAMLQRKMVELQNDLA 111 6********************************************************************************************** PP DUF260 96 llkee 100 l++++ XP_015877442.1 112 LARAR 116 99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.039 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-40 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MVDAMKGGGH RARSSTSCAA CKFLKRRCIP NCIFAPYFRS DEPKKFAKVH KVFGASNVSK 60 ILNEVAEEQR EDAVNSLAYE AEARLRDPVY GCIGAIAMLQ RKMVELQNDL ALARARLAAR 120 CATNISSFSS SSSSSSYTIF DDRLTGTSLS GMQSAAYNGF TDSLSCYSSS TNLTESIPHG 180 LMYDYSYVPY IL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-48 | 14 | 117 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-48 | 14 | 117 | 8 | 111 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015877442.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015877442.2 | 1e-141 | LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 2e-60 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | M5X1A8 | 2e-74 | M5X1A8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ19699 | 3e-75 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-55 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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