PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876987.1
Common NameACT1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 339aa    MW: 38904.1 Da    PI: 8.5645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.2e-061381771155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  XP_015876987.1 138 RRTQKLSDKITALQKLVSPY-----GKTDTASVLQEASGYIKLLQ 177
                     8*****************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.423127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-7138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-4138181No hitNo description
SuperFamilySSF474591.83E-9138186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF557533.27E-44201337No hitNo description
Gene3DG3DSA:3.40.20.101.6E-47204337IPR029006ADF-H/Gelsolin-like domain
PROSITE profilePS5126338.744205339IPR002108Actin-depolymerising factor homology domain
CDDcd112861.12E-65206337No hitNo description
SMARTSM001021.1E-58212339IPR002108Actin-depolymerising factor homology domain
PfamPF002418.5E-36214336IPR002108Actin-depolymerising factor homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030042Biological Processactin filament depolymerization
GO:0005622Cellular Componentintracellular
GO:0003779Molecular Functionactin binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MFLNSSAFCM DSEVLDNDNQ IRAEAYSFPI QSSYTVTHQP GFPTTLHHDE NISHQSMRLG  60
KKILAPQFDT AIQNARKRPI EVDELLPKND IGELIGNQST DMSEWRKIKR NKTTNFEHQW  120
QEGSTRIQQQ RLLVPTVRRT QKLSDKITAL QKLVSPYGKT DTASVLQEAS GYIKLLQDQI  180
RNLFRMLSSS YDSVRGLQPV QANAASGMAV HDDCKLKFLE LKAKRTYRFI VFKIEEKQKQ  240
VVVEKLGEPS QSYEDFSASL PANECRYAVY DFDFVTEENC QKSRIIFIAW SPDASRVRSK  300
MIYASSKDRF KRELDGIQVE LQATDPTEMG LDVIRSRSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1f7s_A3e-842023392139ACTIN DEPOLYMERIZING FACTOR (ADF)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3818590.0KT381859.1 Ziziphus jujuba actin-depolymerizing factor 1 (ACT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310792.10.0actin-depolymerizing factor 1-like
TrEMBLA0A0U4JRK10.0A0A0U4JRK1_ZIZJJ; Actin-depolymerizing factor 1
STRINGLus100234281e-106(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-14bHLH family protein