PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876865.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 300aa    MW: 33448 Da    PI: 5.2175
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07186235147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +      +Rt  ++k++w ++
   XP_015876865.1 186 RRPFSVSEVEALVQAVEELGTGRWRDVKLRAFedaDHRTYVDLKDKWKTL 235
                      678999********************9888878999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.544181240IPR017930Myb domain
SMARTSM007171.6E-7185238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-10186236IPR009057Homeodomain-like
SuperFamilySSF466897.6E-15187268IPR009057Homeodomain-like
CDDcd116604.21E-17187237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDGEWFTCLF VCLCCRFLQR TVMEAVTAIL QDGLHVEVLL QGKKIRDDNR TLLQSGISAK  60
DNLDTLGFTL EPNIEETTPS MCSSDPLPSL SCDTPELLTR SPSTPIVDTG TCDDLPKPLP  120
LPLTNSDTQV QSNHESVSSP TDTLTNEVIP DSQALVAVPD MSMEALAVIP VNQKPRRSEL  180
VQRRTRRPFS VSEVEALVQA VEELGTGRWR DVKLRAFEDA DHRTYVDLKD KWKTLVHTAK  240
ISPQQRRGEP VPQELLDRVL AAHAYWAQHQ AKQHGKHHQS GTLMITEAPA DRQGVECIPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-611702741105Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences 5'-TTTAGGG-3'. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:11513850, ECO:0000269|PubMed:17272298}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876865.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:12909688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928048.10.0telomere repeat-binding protein 4
SwissprotQ9FFY91e-102TRP4_ARATH; Telomere repeat-binding protein 4
TrEMBLW9R2A71e-141W9R2A7_9ROSA; Telomere repeat-binding protein 4
STRINGXP_010096584.11e-142(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-67TRF-like 2
Publications ? help Back to Top
  1. Zentgraf U,Hinderhofer K,Kolb D
    Specific association of a small protein with the telomeric DNA-protein complex during the onset of leaf senescence in Arabidopsis thaliana.
    Plant Mol. Biol., 2000. 42(3): p. 429-38
    [PMID:10798613]
  2. Hwang MG,Chung IK,Kang BG,Cho MH
    Sequence-specific binding property of Arabidopsis thaliana telomeric DNA binding protein 1 (AtTBP1).
    FEBS Lett., 2001. 503(1): p. 35-40
    [PMID:11513850]
  3. Hwang MG,Cho MH
    Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding.
    Nucleic Acids Res., 2007. 35(4): p. 1333-42
    [PMID:17272298]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]