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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26384.4 Da PI: 7.1638 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.5e-10 | 17 | 60 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 rWT Ed+l+ +a ++ + +W++Ia+ ++ gR++ ++ +++ XP_015876516.1 17 RWTRYEDKLFEQALVRFSEDlpdRWEKIAQQLP-GRSPSDVMEHY 60 9*****************99*************.**********9 PP | |||||||
2 | Myb_DNA-binding | 45 | 2.5e-14 | 116 | 160 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +q+G+g+W++I+r + +Rt+ q+ s+ qky XP_015876516.1 116 PWTEEEHRKFLLGLQQFGKGDWRSISRNVVITRTPTQVASHAQKY 160 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.615 | 13 | 67 | IPR017884 | SANT domain |
SMART | SM00717 | 2.7E-8 | 14 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-7 | 16 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-12 | 16 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.32E-8 | 17 | 64 | No hit | No description |
Pfam | PF00249 | 3.4E-8 | 17 | 61 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.657 | 109 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.07E-17 | 111 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-18 | 112 | 164 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 113 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-12 | 113 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.93E-10 | 116 | 161 | No hit | No description |
Pfam | PF00249 | 1.3E-12 | 116 | 160 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MYQDNSCWAM IQSASTRWTR YEDKLFEQAL VRFSEDLPDR WEKIAQQLPG RSPSDVMEHY 60 EALVHDVFEI DSGRVQLPSY ADDSFGLSRW DSASQISFGS KPKQQGGEPE RKKGTPWTEE 120 EHRKFLLGLQ QFGKGDWRSI SRNVVITRTP TQVASHAQKY FLRQNSVKKE RKRSSIHDIT 180 SAETNSVPMS ADQNWIPPPG GQPLPLQQLP PTGHMPDQGA SLGYQNFSFP M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-15 | 14 | 80 | 2 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876516.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024927137.1 | 1e-173 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-57 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M5WIS8 | 1e-118 | M5WIS8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008231910.1 | 1e-119 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 7e-77 | MYB family protein |
Publications ? help Back to Top | |||
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