 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_015876411.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 245aa MW: 27884.6 Da PI: 9.9949 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_015876411.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 99.3 | 1.5e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
XP_015876411.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
79***********************************************8 PP
|
| 2 | K-box | 111.4 | 9.2e-37 | 92 | 189 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+s++ s++ea+a+ +qqe+akL+++i + q+++R +lGe+L+sLslk+L++Le +Le++++kiRskKnell+++ie++qk+e +l+++n+ Lr+k
XP_015876411.1 92 SSNTGSVSEANAQFYQQEAAKLRSQIGSVQKQNREMLGECLSSLSLKDLKNLEGKLERGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 186
3445559**************************************************************************************** PP
K-box 98 lee 100
++e
XP_015876411.1 187 IAE 189
986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.4E-41 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.669 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 7.59E-33 | 17 | 90 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 6.82E-43 | 17 | 94 | No hit | No description |
| PRINTS | PR00404 | 4.5E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 9.1E-27 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.2E-27 | 101 | 187 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.946 | 103 | 193 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048366 | Biological Process | leaf development |
| GO:0048440 | Biological Process | carpel development |
| GO:0048443 | Biological Process | stamen development |
| GO:0048497 | Biological Process | maintenance of floral organ identity |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MAYQNKSMSV SPQRKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60
IVFSSRGRLY EYANNSSVKS TIERYKKACS DSSNTGSVSE ANAQFYQQEA AKLRSQIGSV 120
QKQNREMLGE CLSSLSLKDL KNLEGKLERG ISKIRSKKNE LLFAEIEYMQ KREIDLHNNN 180
QLLRAKIAEN ERNQQNISMM AGGGGGGNYE IMQSQPFDSR NYFQVNALQP NNEYSRQDQM 240
ALQLV
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-19 | 16 | 75 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
