PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 648aa MW: 74236.4 Da PI: 6.9379 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.8 | 3.6e-13 | 55 | 119 | 1 | 68 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 +fY +YAke+GFsvr s++k+ k +e+++++fvC keg ++ ++ + ++ r tr +Ckakl + XP_015875937.1 55 EFYIKYAKEAGFSVRSSSTKRCKGAEEVVWKEFVCFKEGVSSIKDGE---RKMCRGMTRENCKAKLAM 119 6*****************************************99877...889999********9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-11 | 55 | 119 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.0E-32 | 216 | 309 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MSVEQLEANS DCRQVEDISL LSHSKSVDDV YIPQVAENCK PKVGQKFESI DGAHEFYIKY 60 AKEAGFSVRS SSTKRCKGAE EVVWKEFVCF KEGVSSIKDG ERKMCRGMTR ENCKAKLAMF 120 SAANVPTHQQ ISILEFEAGG IENIGCTKKD IYNHEAKVWN ELRGQDAELL KEYFLTEQEK 180 DPCFFFKIDV DDDGKLKRCF WADSVSRRAY GCFGDVVVFD TTYNTNQYGM IFAPLVGVNN 240 HGQTVLFACA FLSDEKTESF VWLFELLKDS MPTNNPKMII TDQDPTMTKA IVQSLPNTFH 300 RYCSWHILEK FSNYLNVITY RDFYKDFQQC IWESECPEKF ERKWVTTIEK ASLDNNDWLK 360 SIFELCLRWV PAYVNHIFSA GMSSSQRAES SHSFFKKYIS KRNLLMDFIL RFNRAFAHQR 420 HEELGADHVD INEKLVLKLP LEMEEQMAEI YTCKIFLKFQ DELWNSLVIM PQFVCENTTH 480 KMYVVKSSPK ERVRRVREIA YDKELDFASC TFIDKAIIYE EASVIVNDGL QSLLGKIESI 540 VSNTKSGGIS EKGSTAHDYE ALKDPSAVRA KGCGQRLKRR KEKATNAAKY RGRCCNGCGK 600 IGQSHDKRNC PLLNNPSSQN EESPQHASEY DSKADSLSST GLHEKMKG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875937.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875937.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4URE3 | 1e-177 | V4URE3_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006428864.1 | 1e-178 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14110 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-81 | FAR1-related sequence 5 |