PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875898.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YA
Protein Properties Length: 348aa    MW: 37894.3 Da    PI: 6.6447
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32174230158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrkpylheSRh+hA+rR+Rg+gGrF
  XP_015875898.1 174 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRKPYLHESRHQHAMRRARGTGGRF 230
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.0E-36172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.491173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-28175230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-24176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-24207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQSKSQSTSR PGPDPHTITP ANVYTEPWWR TSGYNPIPPP LAGGNATNSS SLECPNGGSE  60
SNDDQSLSND DHNEEDDDAT KESPINASPQ SGSYRQEHQV VQHVASNMPM ARDDCLTQPT  120
QLELVGHSIA CASNLYQDPY YGGMMAAYGH QPLGYPPFIG MPQARMPLPL EMTQEPVYVN  180
AKQYQGILRR RQARAKAELE RKLIKSRKPY LHESRHQHAM RRARGTGGRF AKKNDSDASN  240
CTSKEKGSSG PAHSSLSASS SGSEHLASDS NETWNSSNGQ QEARGSQMTD TCTTQNYVNG  300
SGFYQAHGGL QDPAYLCPGE RSEEGVFSGR ERGSISSNQA SQRSLAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19173241169NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875898.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875898.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_015875899.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_015875900.10.0nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV51e-81NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A172ELD31e-179A0A172ELD3_MORAL; Nuclear transcription factor Y subunit A-1-like protein
STRINGXP_010102352.11e-179(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-79nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]