PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015875768.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 200aa MW: 23141.6 Da PI: 10.1482

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.1	1.1e-26	33	120	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y+ +vGF +r+++ ++sk +g+i+ rt+vC+keg+r++ + + +++ ++r+ tr+gCka+l ++k ++gkw vtk+ +eH+H+la XP_015875768.1 33 FYSAYGMRVGFVTRMNYLSRSKLDGTIIGRTLVCNKEGYRKSYRCD-KQSTKPRTPTRVGCKAMLSIRKLSTGKWIVTKFIKEHTHSLA 120 9***************************************9999.9************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-24	33	120	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MTQKSSKEKS NVVEGDEPYV GQEFDTEEAA HAFYSAYGMR VGFVTRMNYL SRSKLDGTII 60 GRTLVCNKEG YRKSYRCDKQ STKPRTPTRV GCKAMLSIRK LSTGKWIVTK FIKEHTHSLA 120 ARYSQNVLIS HQVPNETMKI QELTQQLLLE RKRSASFRKV IDLLFNHIEE HTQDLSRKVQ 180 CMVDKVKQIE SDGKDYKNLR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875768.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875767.1	1e-149	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_015875768.1	1e-150	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_024926385.1	1e-150	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2I4FBJ8	1e-104	A0A2I4FBJ8_JUGRE; protein FAR1-RELATED SEQUENCE 12-like
STRING	EOY09724	7e-98	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-68	FAR1 family protein