PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

WRKY

Protein Properties

Length: 284aa MW: 31306.4 Da PI: 5.8872

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	92	150	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY++eHnh+ XP_015875633.1 92 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVVTYSSEHNHP 150 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.6E-32	84	152	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	89	152	IPR003657	WRKY domain
SMART	SM00774	6.3E-37	91	151	IPR003657	WRKY domain
PROSITE profile	PS50811	32.466	92	152	IPR003657	WRKY domain
Pfam	PF03106	3.3E-26	93	150	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEAARLSNSK PTPFMSDLDH EDNDNSTSST TTDSPPPSNY STFFNNDSKN ILSASSPKKR 60 RAVQKRVVSV PIKEVEGSRL KGESSTGNTP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS 120 KGCPARKQVE RSRVDPTMLV VTYSSEHNHP WPPPSRNHHH HHHSAATTAK QPSKPQTPPT 180 ATDHHHTDPE PEPEERFADL GEEPVMATDE FRWFDEMETT SSTVLESPIF AESGGACSDA 240 GGDVGGMVFP MREEDESLFA DLGELPECSV VFGHRGVGPQ VEIC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-21	78	152	3	79	Disease resistance protein RRS1
5w3x_D	7e-21	78	152	3	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875633.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875633.1	0.0	probable WRKY transcription factor 65 isoform X2
Swissprot	Q9LP56	5e-86	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2I4GQW4	1e-109	A0A2I4GQW4_JUGRE; probable WRKY transcription factor 65
STRING	XP_009352729.1	1e-104	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	4e-77	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]