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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GeBP | ||||||||
Protein Properties | Length: 393aa MW: 43780.8 Da PI: 7.039 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 79.4 | 5.5e-25 | 132 | 238 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgk...........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgk..epsfskehd 85 + ws++De++lL+ ++d+++k+ k +s+ + fy++v+ +++f++sksqlveK+rrLK+K+++k+k++ +g +++f+++hd XP_015875452.1 132 RINWSQDDELLLLRSFLDYTTKKLKtgnnqqqtdasTSSSSSSSFYDQVEPQLKFRFSKSQLVEKLRRLKRKYHNKRKNSTTGPciDFRFKNPHD 226 445****************8876444435444444333445678***********************************88885448999***** PP DUF573 86 qkifelskkiWg 97 + +fe+s+kiW XP_015875452.1 227 KATFEISHKIWS 238 ***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.3E-21 | 134 | 238 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MSVDNPAING DGERKLWFNG AVKKMTWPLV SWIMSSSSSS SSSSSSSSEY HDEDEVEISC 60 QAKDNAGIDD DDNSATPSME TPNQSLSTAV TIAIPGILDN SASSSKRRRL DNVTLALPCF 120 EKKKESPQQK MRINWSQDDE LLLLRSFLDY TTKKLKTGNN QQQTDASTSS SSSSSFYDQV 180 EPQLKFRFSK SQLVEKLRRL KRKYHNKRKN STTGPCIDFR FKNPHDKATF EISHKIWSTS 240 NNNNSIGDHE EEISPLDLYI VKVKSEEDVI DNNYNNSSGD RMLMMRPQTR SQCVAAAGLG 300 SKRSVVEEEG SLLINNNNDD NKGGGTPAAL KPIPVSLEGR GIKLGGGGEV VDEKWKKQQI 360 MELEVYSKRL ELVQEQVKTT LEKLRSMGST TSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 109 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875452.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875452.2 | 0.0 | probable transcription factor At3g04930 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 6e-22 | DNA-binding storekeeper protein-related transcriptional regulator |