PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875424.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 350aa    MW: 36368.6 Da    PI: 5.9102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10199243554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  XP_015875424.1 199 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 243
                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.13E-11192248No hitNo description
SuperFamilySSF474591.3E-15192253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15196254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7199243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAGNPPEGLG DDFLEQILAV PQTYTGGGGG TDGTGYGGGG GGGEVGSMPM VLQLGSGGGN  60
GSGGSGSGGG GGGGGGFRGV GMGMGLPLGL NLEQGFLRQD RFREDVDGNT NNNTNINNVS  120
SSAAATSGIN ERDSVHMTSL FPAFGHLQNQ SLRPTPPPPP PQLHQFHSQS TAGPVATVPH  180
PPTIRPRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPSCNKTDRA AMLDEIVDYV  240
KFLRLQVKVL SMSRLGGAGA VAQLVADVPL SSVEGEGMES GNNQAAWEKW SSDGTEQQVA  300
KLMEEDVGAA MQFLQSKALC IMPISLASAI FRTHQPDAST LVKPESNTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875424.10.0transcription factor UNE12-like isoform X2
SwissprotO227687e-85UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A314YM141e-167A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRINGEMJ066851e-164(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]