PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875423.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 351aa    MW: 36496.8 Da    PI: 5.9102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10200244554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  XP_015875423.1 200 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 244
                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.43E-11193249No hitNo description
SuperFamilySSF474591.3E-15193254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15197255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7200244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAGNPPEGLG DDFLEQILAV PQTYTGGGGG TDGTGYGGGG GGGEVGSMPM VLQLGSGGGN  60
GSGGSGSGGG GGGGGGFRGV GMGMGLPLGL NLEQGFLRQD RFREDVDGNT NNNTNINNVS  120
SSAAATSGIN ERDSVHMTSL FPAFGHLQNQ SLRPTPPPPP PQLHQQFHSQ STAGPVATVP  180
HPPTIRPRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPSCNKTDR AAMLDEIVDY  240
VKFLRLQVKV LSMSRLGGAG AVAQLVADVP LSSVEGEGME SGNNQAAWEK WSSDGTEQQV  300
AKLMEEDVGA AMQFLQSKAL CIMPISLASA IFRTHQPDAS TLVKPESNTS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875423.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875423.10.0transcription factor UNE12-like isoform X1
SwissprotO227681e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A314YM141e-166A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRINGEMJ066851e-163(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]