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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875386.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | CPP | ||||||||
Protein Properties | Length: 791aa MW: 87611.5 Da PI: 6.7079 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.8 | 1.4e-15 | 506 | 543 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCk+skClk+YCeCfaag +C +C+C dC N+ XP_015875386.1 506 CKRCNCKRSKCLKLYCECFAAGLYCVGSCSCIDCLNNP 543 79**********************************86 PP | |||||||
2 | TCR | 51.4 | 2.2e-16 | 590 | 629 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+ClkkYCeCf+ g+ Cs +C+C +CkN+ XP_015875386.1 590 RHKRGCNCRKSSCLKKYCECFQGGVGCSVSCRCIGCKNTF 629 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.4E-15 | 504 | 545 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.143 | 505 | 630 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.1E-11 | 507 | 542 | IPR005172 | CRC domain |
SMART | SM01114 | 2.2E-18 | 590 | 631 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.4E-12 | 592 | 628 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 791 aa Download sequence Send to blast |
MDTPVKNQLS PATPFSSKFE DSPVFNFISN LSPIEPVKTR LNDHTFNSVN FSSPPSLFAS 60 PQISSFSETR FAIRRHHFSD PTKPDSSRSE NENNTSEGVS VAVQPSNLRT EQLGYISPGS 120 SAREVIDEPL TDNLELAIEL PSSFKYDSGS PSSSVLPCDA INTGSVSDTT NTQAQLVQSV 180 TVNSKERHIL FEREKYLRRI NWVEQNNEAA RHDWEKKISD TDNLFNFDSP VTGEQPEGQD 240 PRTVDTGSMS FISDVLEDDL NKFERPESTD PVGSCEHYVM GEPCKESKGT GDMKETDQTP 300 AVLSSTLMDK LVVNDSNDMV DDKRRKGIQS SCKPRPQLHR TIRRRCLDFE RAGSHEKKSS 360 CECSGSSAVA IQSNSKVASV QNKFVHSMGG SFRSSSKLPG VGLHLNSPAT PTEGKVVNNE 420 SWASESQRIS KRVSIRSCDS LIPRETSHDK FSPKRSLERD LVPYDNEGQA IEEAHQTSTY 480 VDEEFDSSSP QNKRRKSEHV VENLACKRCN CKRSKCLKLY CECFAAGLYC VGSCSCIDCL 540 NNPIHENTVL ETRRQIESRN PLAFAPKVIR STDAVAEFGD ETNKTPASAR HKRGCNCRKS 600 SCLKKYCECF QGGVGCSVSC RCIGCKNTFG RKDGDCLSVG AEETEFKESK VETLGEKNAT 660 DVETVGEPDL LKTPSEIGRP LYQQPVTLRG KPSPSPQLFN RQNPEKSKVL CGQLKFETRF 720 EVIPEDEALE KMESISQETS GLKSGSPDSK RVSPPHGHGE SGSSLNCWRG GRKLILRSIP 780 PFPNFNPPSH H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-17 | 507 | 627 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-17 | 507 | 627 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875386.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875386.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X1 | ||||
TrEMBL | A0A2P5DKQ7 | 0.0 | A0A2P5DKQ7_PARAD; Lin-54-like protein | ||||
STRING | XP_010090260.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-103 | Tesmin/TSO1-like CXC domain-containing protein |