PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875344.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 633aa    MW: 71885.3 Da    PI: 7.2273
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.92.3e-17124186269
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                     W+++evlaL+++r+ me+++ +       We++s+km+e gf+rs+++Ckek+e+ ++++ +i+ +++
  XP_015875344.1 124 WSHDEVLALLRIRSTMENWFPDF-----TWEHISRKMAELGFKRSAEKCKEKFEEESRYFNNINYIKN 186
                     ********************998.....9*******************************99987765 PP
2trihelix93.42.3e-29469554186
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++evlaLi++r ++ ++ ++ +  k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  XP_015875344.1 469 RWPRDEVLALINLRCSLYNSNEDkEGVKAPLWERISQGMLDLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTCPYFHQLS 554
                     8***************999999724599*******************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.6120177IPR001005SANT/Myb domain
PfamPF138372.5E-11123183No hitNo description
PROSITE profilePS500906.272123175IPR017877Myb-like domain
SMARTSM007170.23466529IPR001005SANT/Myb domain
CDDcd122033.17E-25468534No hitNo description
PfamPF138371.0E-18468554No hitNo description
PROSITE profilePS500906.679469527IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MFDGVPDQLH QFIASSRSTT TSSLPLPLSS FPLHASPSPN TITFPPLDAY SNNHHHNHHQ  60
VPLQPHHQVL LQPLHHNPPP PAQKINHEEK EGNNLVNSFN LEIDDDTDRS SIPEPVAPPL  120
PPPWSHDEVL ALLRIRSTME NWFPDFTWEH ISRKMAELGF KRSAEKCKEK FEEESRYFNN  180
INYIKNYRFL TELEELYHGH DHPHHHQNPQ VVGAEKSQKA QAVDKPSERR EGEEDKRGQS  240
VEKESENNEE KMMMEERLKR KKRKRHKSFE IFKGFCEDIV NKMMAQQEEM QNKLLEDMVK  300
RDEEKVAKEE AWKKQEILRM NKELEIMAHE QALAGDRQAT IIEFLKKFTS TSSSSSGGEI  360
LKSFNPFIPP TSSSSIQPLQ NPNPTSTSTV GNRHQNSNSL SLVVPENPSS NPATPTIPKL  420
PTTSSPLASK NPNSFDTQKK PLTPTSTSCS IQKVPQNPSS NEKDDIGKRW PRDEVLALIN  480
LRCSLYNSNE DKEGVKAPLW ERISQGMLDL GYKRSAKRCK EKWENINKYF RKTKDVNKKR  540
SIDSRTCPYF HQLSTLYNQG TVNAGHPTQV QEHCSANSPE SHSSALPETT GRGGNSSLVG  600
IVGSSFTADS CLHDTNQGAR NMVQVSAAFD FEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258264KRKKRKR
2259264RKKRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875344.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875344.10.0trihelix transcription factor GTL2-like
TrEMBLA0A2I4G7Y10.0A0A2I4G7Y1_JUGRE; trihelix transcription factor GTL2-like
STRINGEOY111090.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-70Trihelix family protein