PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874689.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 896aa    MW: 98502.5 Da    PI: 6.5032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.8e-19330430199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  +++
  XP_015874689.1 330 FEKVLSASDAGRIGRLVLPKACAEAYfpHISQSEGLPLRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQTMQLRAGDTVTFSRID-PGGK 422
                     99**************************555566778***************9989999999***9.********************887.7888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     lv++++++
  XP_015874689.1 423 LVMGFRKA 430
                     88887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-29326432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-20327430IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-22328429No hitNo description
SMARTSM010196.8E-22330431IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898330431IPR003340B3 DNA binding domain
PfamPF023624.5E-16330429IPR003340B3 DNA binding domain
PROSITE profilePS5105013.928589639IPR011124Zinc finger, CW-type
PfamPF074961.8E-10594636IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MGSKICMNES CGATNTHEWK NGWPLKSGGF ASLCHSCGSA YENSVYCDSF HQEQTGWRDC  60
STCGKHIHCG CIASKSLYEF LDIGGVGCTS CASSSQHSSL RNDETPKGFG GSQISNGGDS  120
QSTSIQNGVV HGGVDEGRLM QLCKIMEANE SNLLPLPQRC ETNVSLAQTK RDDVIHQMGE  180
IGPGFSGVTQ SSIGSLTFAK PDNGRTMLEV KDMHESCAQP SLNMTLGPSG SSNFILPFSG  240
GVVDLREHSK QPSSFQQGQR SRPIFPKPLK SGLTGGSETN KSAITQMRIA RPPGEGRGKN  300
QLLPRYWPRI TDQELEKLSG DLNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPHIS  360
QSEGLPLRIQ DVKGNEWTFQ FRFWPNNNSR MYVLEGVTPC IQTMQLRAGD TVTFSRIDPG  420
GKLVMGFRKA SNSVDMQDAE TSVLPNGTPG ETFLSSVLEN MPGGSGQSGH FQTNKGSKDP  480
RLIALSENLH LADEDIGLHK CDSNGDSLQQ SLSNSEKKRT RNIGSKSKRL LMHSEDVLEL  540
RLTWEEAQDL LRPPPSVKPS IVTIEDHEFE EYDEPPVFGK RTIFISRPAG GQEQWAQCDD  600
CSKWRSLPVE VLLPPKWTCS DNCWDSSRSL CSVPEEMSLK ELENLVRANR DFKKRKTVES  660
HKAAQDREPS GLDALASAAV LGDNVGDPGE SSVGATTRHP RHRPGCTCIV CIQPPSGKGK  720
HKPTCTCNVC MTVKRRFKTL MLRKKKRQSE REAEMAQKDD NLHRDELEIN GTSRDELLHM  780
HHSENEGSQS KIQNEVGETS TGQIDLNCHP NREDMQLEGP GFTMMNIIQV ASLPLENYMK  840
QNGIANLMCK QQGSIGSCLL TQDTGEGGRH VPDEGGHASV VWERENDQSY HEPNLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-703084372131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1733744KRRFKTLMLRKK
2733746KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874689.10.0B3 domain-containing transcription repressor VAL1-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLW9SAB70.0W9SAB7_9ROSA; B3 domain-containing protein
STRINGXP_010108467.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]