PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874298.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 404aa MW: 45141.5 Da PI: 6.8671

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	261	316	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_015874298.1 261 KQRRCWSPELHRRFVSALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 316 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-30	258	319	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-18	258	319	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.214	258	318	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.2E-26	261	316	IPR006447	Myb domain, plants
Pfam	PF00249	9.6E-8	263	314	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MGSVLAELSL DFRPTFVPKT IRDFLKEVSM IRNVPERVAK FDDFLKRLEE EMRKIDAFKR 60 ELPLCMLLLN DAILTLKEEL TQCAVPNAEP VLEEFIPLKK DCDENEEQNN DNKEKDCKDK 120 KNWMSSVQLW NTDDYPTTDF KIDPKLTSKT EIKRNEKEYG FTTEDPVHCS RNRTGGRSFI 180 PFKAYSAFPG IRKEDKDELP VHGLSLLTPG VKNPKEESGS SGSRSTSSRA VSSSAAAAAA 240 VNVQSNLRAG QQQPQQQTSR KQRRCWSPEL HRRFVSALQQ LGGSQVATPK QIRELMQVDG 300 LTNDEVKSHL QKYRLHTRRL PASSAAPANQ SIVVLSGLWM SQDQYGDSSK ASSSQSGSPQ 360 GPLQLTGTGG TSTTGCDSME DDEDARSEGY SWKSHVHKPG NDDV

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MGSVLAELSL DFRPTFVPKT IRDFLKEVSM IRNVPERVAK FDDFLKRLEE EMRKIDAFKR  60
ELPLCMLLLN DAILTLKEEL TQCAVPNAEP VLEEFIPLKK DCDENEEQNN DNKEKDCKDK  120
KNWMSSVQLW NTDDYPTTDF KIDPKLTSKT EIKRNEKEYG FTTEDPVHCS RNRTGGRSFI  180
PFKAYSAFPG IRKEDKDELP VHGLSLLTPG VKNPKEESGS SGSRSTSSRA VSSSAAAAAA  240
VNVQSNLRAG QQQPQQQTSR KQRRCWSPEL HRRFVSALQQ LGGSQVATPK QIRELMQVDG  300
LTNDEVKSHL QKYRLHTRRL PASSAAPANQ SIVVLSGLWM SQDQYGDSSK ASSSQSGSPQ  360
GPLQLTGTGG TSTTGCDSME DDEDARSEGY SWKSHVHKPG NDDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-14	261	314	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-14	261	314	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-14	261	314	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-14	261	314	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874298.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874298.1	0.0	transcription factor HHO6
TrEMBL	A0A2P5FZ46	0.0	A0A2P5FZ46_TREOI; GARP transcription factor
STRING	XP_004290315.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1208	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-51	G2-like family protein