PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015874240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 438aa MW: 50879.4 Da PI: 9.178 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.7e-17 | 6 | 94 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f +l+ s++ ++++l++p +f++++ + s+ tl+ ++g +W+v l ++ +++y++ +GW +Fv+ +++g f+vF+++g+s+f+ ++ XP_015874240.1 6 FHKLVLSSTIQTKQLRIPESFVKKFRDE--LSTIATLNVPDGHVWRVGL--KRVDNKYWFHDGWHGFVERYAIRVGYFLVFRYEGNSTFSVFI 94 45677789999999********999755..888999*************..**********************************99996655 PP | |||||||
2 | B3 | 59.6 | 5.5e-19 | 302 | 392 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l + ++ l+v+vf XP_015874240.1 302 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQTSDGRQWSVRCLYRGGR--AKLSQGWYEFSLENHLGEGDVCVFELLKMRDIVLKVTVF 391 78899******************877743...5***************665555..66***********************99888888999998 PP - CS B3 98 r 98 r XP_015874240.1 392 R 392 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-24 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-23 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.15E-18 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.831 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-15 | 6 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-15 | 6 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-24 | 291 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-24 | 292 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.15E-22 | 297 | 392 | No hit | No description |
SMART | SM01019 | 3.1E-18 | 299 | 394 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.043 | 299 | 394 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-17 | 302 | 392 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MPRPYFHKLV LSSTIQTKQL RIPESFVKKF RDELSTIATL NVPDGHVWRV GLKRVDNKYW 60 FHDGWHGFVE RYAIRVGYFL VFRYEGNSTF SVFIYNLNTS EINYQSNALS SPEAVYRNRY 120 QVFEEMEDED NVEILGSYVP SGSLKHKLFA DCSDHLTQGK GFNPPSLQNL FNGSKQKNCI 180 SWGNEGNMHP GKVAGSLQAG NQSTRDIGVQ FNVMELKRSV DEVKFHNSEA NIQKIKKSIR 240 KKRKMDADDE ESSVPHEEDV EMRFRFYESA SARKRTVTAE ERERAINAAK AFEPANPFCR 300 VVLRPSYLYR GCIMYLPSCF AEKNLNGVSG FIKLQTSDGR QWSVRCLYRG GRAKLSQGWY 360 EFSLENHLGE GDVCVFELLK MRDIVLKVTV FRVAEEAGYM NQHQHQHHHH HHHQHHHHHP 420 HTHPHQQHTV SHIKLIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-71 | 265 | 395 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-71 | 265 | 395 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015874240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF189919 | 6e-82 | KF189919.1 Frangula alnus subsp. alnus clone Contig4847 polymorphic genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015874240.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 1e-141 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2P5BW72 | 0.0 | A0A2P5BW72_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_010096266.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-135 | B3 family protein |
Publications ? help Back to Top | |||
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