PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874015.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 625aa    MW: 69182.5 Da    PI: 8.9992
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07526575147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_015874015.1 526 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 575
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.72E-8329420IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.565521580IPR017930Myb domain
SMARTSM007172.0E-7525578IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-10526576IPR009057Homeodomain-like
CDDcd116602.53E-17527577No hitNo description
SuperFamilySSF466891.11E-15527608IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPATP RATRSARRRG TPRKRSEENQ MCAFDLLATV AGKLLLDPES  60
SPSSSNTSSD KDRCTVVNQD WQDGNKALKV EPCNQGSCDR IFMVSEQFPQ VHDENHSSKE  120
SSLPQNDDQS GFTSMITTSN CSESSEDPVV WDGEPPAIVS SDSSAKVPFC GDHNPQSSCP  180
ASRDDIKVVS RDDDENSSGC THPNTSTKYF KRAPRIGDRR IRKILASKHW KVSPRLNDET  240
FSHPDGDIKP LYRSRKDCYK RQRSQMNIPF KKRKLFDRGS GVKSDGGING DGFFRSPEEG  300
TGDATGSFPK LRGGTGRSCS MPGQRASFQS RDSHVKLRIK SFRVPELFIE IPETATVGSL  360
KRTVMEAVTE ILGGGLHIGV LVQGKKVRDD SKTLLQTGIS HDNQLDALGF TLEPSRSQSP  420
PPLCTGDSPH LLPADAPQPL ARYAPNPTID HQGTSDASPE PHETNLGNFV ESDHDSAPSP  480
TDMSASKSTT DSKALVPVPA MSVEALAVVP VHRKSKRSEI AQRRIRRPFS VAEVEALVQA  540
VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL  600
TAHAYWSQQQ AKQQLKQQPE TCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-585106161107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874015.10.0telomere repeat-binding protein 5 isoform X3
SwissprotQ6R0E31e-173TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2P5DQL70.0A0A2P5DQL7_PARAD; Octamer-binding transcription factor
STRINGEMJ099100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-137TRF-like 2