PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874013.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 686aa    MW: 75666.9 Da    PI: 8.5751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07587636147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_015874013.1 587 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 636
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.01E-7390481IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.565582641IPR017930Myb domain
SMARTSM007172.0E-7586639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10587637IPR009057Homeodomain-like
CDDcd116603.50E-17588638No hitNo description
SuperFamilySSF466891.2E-15588669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPATP RATRSARRRG TPRKRSEENQ MCAFDLLATV AGKLLLDPES  60
SPSSSNTSSD KDRCTVVNQD WQDGNKALKV EPCNQGSCDR IFMVSEQFPQ VHDENHSSKE  120
SSLPQNDDQS GFTSMITTSN CSERLGSDKM VNGEIKNEMG SFISKIEVGS SACRESDNCK  180
LDGEAKILVN DTGKVLIGNV NDVCSSEDPV VWDGEPPAIV SSDSSAKVPF CGDHNPQSSC  240
PASRDDIKVV SRDDDENSSG CTHPNTSTKY FKRAPRIGDR RIRKILASKH WKVSPRLNDE  300
TFSHPDGDIK PLYRSRKDCY KRQRSQMNIP FKKRKLFDRG SGVKSDGGIN GDGFFRSPEE  360
GTGDATGSFP KLRGGTGRSC SMPGQRASFQ SRDSHVKLRI KSFRVPELFI EIPETATVGS  420
LKRTVMEAVT EILGGGLHIG VLVQGKKVRD DSKTLLQTGI SHDNQLDALG FTLEPSRSQS  480
PPPLCTGDSP HLLPADAPQP LARYAPNPTI DHQGTSDASP EPHETNLGNF VESDHDSAPS  540
PTDMSASKST TDSKALVPVP AMSVEALAVV PVHRKSKRSE IAQRRIRRPF SVAEVEALVQ  600
AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV  660
LTAHAYWSQQ QAKQQLKQQP ETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-585716771107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874013.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E31e-173TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2P5D6E60.0A0A2P5D6E6_TREOI; Octamer-binding transcription factor
STRINGXP_010106503.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-137TRF-like 2