PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_015873856.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 339aa MW: 38942.1 Da PI: 6.4198

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015873856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.7	8.9e-14	55	130	1	79
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY +YAke+GFsv +s++k+ k +e+++++fvC ke ++ ++++ ++r tr +Ckakl v ++k+gk++++ XP_015873856.1 55 EFYIKYAKEAGFSVHNSSTKRCKGANEVVRKEFVCFKEEVSSIKDDE---RKRCWGMTRENCKAKLAVVRSKTGKFVIS 130 6************************************99998877...8889999***************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-11	55	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-31	227	320	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSVEQLEANS DCRRVENISL LSHSKSVDDV YIPQVAENYK PKVGQEFESI DGAHEFYIKY 60 AKEAGFSVHN SSTKRCKGAN EVVRKEFVCF KEEVSSIKDD ERKRCWGMTR ENCKAKLAVV 120 RSKTGKFVIS FSAANVPTHQ QISILEFEAG GIENIGCTTK DIYNHEAKVR NELKGQDAEL 180 LKEYFLTEQE KDSCFFFKID VDDDGKLKCC FWADSVSRRA YGCFGDVVVF DTTYNTNQYG 240 MIFAPLVGVN NHGQTVLFPC AFLSDEKRES FVWLFELLKD SMPTNNPKMI ITDQNPAMTK 300 AIVQSLPNTF HRYCSWHILE KFSTYLNAIT YREFYKDFH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015873856.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015873856.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-121	A0A067D5X9_CITSI; Uncharacterized protein
STRING	XP_004297991.1	1e-118	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-51	FAR1-related sequence 5