PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873603.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 658aa    MW: 76679.3 Da    PI: 8.3947
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.72.2e-2435129290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn+YA+e+GFsvr s+s+k+  +ge ++++ vC+keg+++e+ +k      +++ +rtr   r+gCkakl++ k+++  w v+k+++eHnHela
  XP_015873603.1  35 FYNRYAREAGFSVRLSNSRKRPGTGELIWKKIVCYKEGETNETYQKkfkyavARSGERTRGIVRVGCKAKLTLVKRNSPLWTVSKFVEEHNHELA 129
                     9**************************************999998889**99999999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2235129IPR004330FAR1 DNA binding domain
PfamPF105514.9E-26250342IPR018289MULE transposase domain
PROSITE profilePS509669.878534566IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-6540560IPR007527Zinc finger, SWIM-type
SMARTSM005759.7E-5541568IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MKGEPSVQPY IPQVADEHKP EVGQEFQTIE GAYAFYNRYA REAGFSVRLS NSRKRPGTGE  60
LIWKKIVCYK EGETNETYQK KFKYAVARSG ERTRGIVRVG CKAKLTLVKR NSPLWTVSKF  120
VEEHNHELAT PNKVHLLRSH SRLSSAKKTS VQRSSDENVS TSKKVRVTGI EHGADTERDI  180
RNCKAELYEG ELREEVMQID GETLIELFVL EREKNHGFYF GFEKDKEDRL VRCFWVDPYS  240
RRSYTFFGDV VAFDTVYNTN KYGMIFAQFT GFNHHGQVTM LGCGLLCDET TESFVWLFNQ  300
WMNAMSKVVP QMIVTDQVPA ISKAVAQVLP KTFQRYGLWH ILYQFSEKIN PLISVENYHL  360
LRNIILNSET IEEFERSWRG KIQKNKLEDN DWLCQLYEER GRWVPIYVKH MFAAEVSSSQ  420
ATESCHSFLE RRISKKHSLM DFIIRFNRAL QQQRYEELMA DHYDINEQPL LQSMWPIEKQ  480
MARVYTRKVF QSFQDEIFES SACIINNLCE DEVSVSYAVQ TFEECSSKSQ KLVYNKLSDF  540
VSCSCQQFEY KGIPCRHMLT YFRIKQFLQL PTQYILQRWT KGAKNGPLWE KSGGEIKSFQ  600
SRSLMSRHAK LSQLFSTVID DASLTEEGTN VLLNMLEDIQ SRVKKINMGN GVEHVSTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873603.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873603.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024926105.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z7A5M31e-167A0A2Z7A5M3_9LAMI; Protein FAR-RED IMPAIRED RESPONSE 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-114FAR1-related sequence 5