PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015873302.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 882aa MW: 99699.3 Da PI: 6.3966

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015873302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.2	2.8e-18	64	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGFs ++s s++s+ +g+ ++r+fvC +eg ++++ ++ C+a+lk+++++++kw+vtk+++eH+H+l XP_015873302.1 64 FYDEYARRVGFSSKVSLSSRSQPDGTSITREFVCGREGLKRKHADS--------------CDAMLKIELKDHDKWVVTKFVKEHSHSLL 138 9************************************9998877..............************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-14	64	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-30	275	368	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.078	554	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-10	556	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MDVEVIDVEG MGHRAMVEPE DGDAEPNESG ETNATENSAA YDETGIVEPY VGMEFDSEDV 60 AKTFYDEYAR RVGFSSKVSL SSRSQPDGTS ITREFVCGRE GLKRKHADSC DAMLKIELKD 120 HDKWVVTKFV KEHSHSLLSP SKVHYLRPRR HFAGNAKTVT EAYQGVGVVP SGVMYVSMDG 180 NRASAEKNRG ARNTQPIESN RPVKNAASMN YAVRLSTRRR TLGKDSQNLL EYFKKMQAEN 240 PGFFYAIQLD EDNRMTNVFW ADSRSRTAYS HFGDVVTLDT TYRVNQYRVP FAPFTGVNHH 300 GQTILFGCAL LLDESEASFI WLFKTFLTAM NDQPPVSIVT DQDRAVQTAV AHVFPEARHC 360 ISKWHVLREG QEKLAHVCLA NPNFQVELYN CINLTETIEE FESSWNSVLD KYDLRRNDWL 420 QSLYNARAQW VPVYFRDSFF AAISPNLGYD GSFFDGYVNQ QTTLPMFFRQ YERALENWSE 480 KETEADFDTL CTMPVLRTPS PMEKQAANLY TRKIFGKFQE ELVETFVYTA NRIEGDGAIS 540 TFRVAKFEDD NKAYIVTLNY PEMRANCSCQ MFEYSGILCR HVLTVFTVTN VLTLPSHYIM 600 KRWTRNAKSG PGTDERSVDI HGQESLTLRY NNLCREAIRY AEEGATAVET YQAALSALRD 660 GGKKVALVKK NVAKVAPPSS QVSGASYDDR KISALASDTT PLLWPRQDEV LRRFNLNDAG 720 AHAQSVADLN LPRMAPVSLH RDDGPPENMV VLPCLKSMTW VMENKNSTPG NRVAVINLKL 780 QDYSRTPSAE SEVKFQLSRV SLEPMLRSMA YISEQLSTPA NKVAVINLKL QDTETTSGES 840 EVKFQVSRDT LGAMLRSMAY IREQLSNAGE NQPEPLPKKQ RK

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MDVEVIDVEG MGHRAMVEPE DGDAEPNESG ETNATENSAA YDETGIVEPY VGMEFDSEDV  60
AKTFYDEYAR RVGFSSKVSL SSRSQPDGTS ITREFVCGRE GLKRKHADSC DAMLKIELKD  120
HDKWVVTKFV KEHSHSLLSP SKVHYLRPRR HFAGNAKTVT EAYQGVGVVP SGVMYVSMDG  180
NRASAEKNRG ARNTQPIESN RPVKNAASMN YAVRLSTRRR TLGKDSQNLL EYFKKMQAEN  240
PGFFYAIQLD EDNRMTNVFW ADSRSRTAYS HFGDVVTLDT TYRVNQYRVP FAPFTGVNHH  300
GQTILFGCAL LLDESEASFI WLFKTFLTAM NDQPPVSIVT DQDRAVQTAV AHVFPEARHC  360
ISKWHVLREG QEKLAHVCLA NPNFQVELYN CINLTETIEE FESSWNSVLD KYDLRRNDWL  420
QSLYNARAQW VPVYFRDSFF AAISPNLGYD GSFFDGYVNQ QTTLPMFFRQ YERALENWSE  480
KETEADFDTL CTMPVLRTPS PMEKQAANLY TRKIFGKFQE ELVETFVYTA NRIEGDGAIS  540
TFRVAKFEDD NKAYIVTLNY PEMRANCSCQ MFEYSGILCR HVLTVFTVTN VLTLPSHYIM  600
KRWTRNAKSG PGTDERSVDI HGQESLTLRY NNLCREAIRY AEEGATAVET YQAALSALRD  660
GGKKVALVKK NVAKVAPPSS QVSGASYDDR KISALASDTT PLLWPRQDEV LRRFNLNDAG  720
AHAQSVADLN LPRMAPVSLH RDDGPPENMV VLPCLKSMTW VMENKNSTPG NRVAVINLKL  780
QDYSRTPSAE SEVKFQLSRV SLEPMLRSMA YISEQLSTPA NKVAVINLKL QDTETTSGES  840
EVKFQVSRDT LGAMLRSMAY IREQLSNAGE NQPEPLPKKQ RK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015873302.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015873302.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2N9FLY7	0.0	A0A2N9FLY7_FAGSY; Uncharacterized protein
STRING	XP_010097934.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]