PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015872368.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Protein Properties

Length: 372aa MW: 42865 Da PI: 8.7307

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015872368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.9	9.3e-19	18	100	12	98
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k + +++p +++++ ++ ++ + t++ +sgr W+v++ +++ + +++++GW++F+k ++L++gDf+vF +dg+s+f+ ++ ++ XP_015872368.1 18 KDNDMRIPPEYVKNLDK--RSLGKCTIRGPSGRCWTVEV--DQRENNFYFAGGWQDFAKYHRLEVGDFLVFDYDGKSNFRAKIYCRS 100 5667******66654..455599**********..******************************9*99888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	14.043	7	100	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-11	9	102	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.9E-20	14	100	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.37E-19	16	103	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.2E-16	18	100	IPR003340	B3 DNA binding domain
CDD	cd10017	1.52E-16	22	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MISRTISTNV IFMNAIDKDN DMRIPPEYVK NLDKRSLGKC TIRGPSGRCW TVEVDQRENN 60 FYFAGGWQDF AKYHRLEVGD FLVFDYDGKS NFRAKIYCRS SSKEDAGLSE NNNDKLVSLV 120 EKKIYLEPKV EVDELESEVY KEKCKKKITD SNIVACDHGL SRKKPCSGKK VEGYYLEPKV 180 EVDELVPEIN KEQCKRKVID ELVPENNKEQ CKRKVIDSNI TACECGLSRK KSHAGKKVEG 240 NYLEPKVEVD ELEPEIHKEN IKKKVIDSNI IDRDCGLSRE KPNIGQKVGR NCLQRKVQAD 300 EIERVVYKEK CKKKVTNSNK VDRNCDSARK KPCANEKVEG NHLQPQVEDE ELQPEIYKKY 360 SKKKVMNSKK VA

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MISRTISTNV IFMNAIDKDN DMRIPPEYVK NLDKRSLGKC TIRGPSGRCW TVEVDQRENN  60
FYFAGGWQDF AKYHRLEVGD FLVFDYDGKS NFRAKIYCRS SSKEDAGLSE NNNDKLVSLV  120
EKKIYLEPKV EVDELESEVY KEKCKKKITD SNIVACDHGL SRKKPCSGKK VEGYYLEPKV  180
EVDELVPEIN KEQCKRKVID ELVPENNKEQ CKRKVIDSNI TACECGLSRK KSHAGKKVEG  240
NYLEPKVEVD ELEPEIHKEN IKKKVIDSNI IDRDCGLSRE KPNIGQKVGR NCLQRKVQAD  300
EIERVVYKEK CKKKVTNSNK VDRNCDSARK KPCANEKVEG NHLQPQVEDE ELQPEIYKKY  360
SKKKVMNSKK VA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015872368.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872368.2	0.0	uncharacterized protein LOC107409447, partial

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06220.1	2e-15	B3 family protein