PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872098.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CPP
Protein Properties Length: 868aa    MW: 95718 Da    PI: 5.6161
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR482.5e-15437475341
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     +k+CnCk+skClk+YCeCfaag++C ++C Ce+C Nk e
  XP_015872098.1 437 CKRCNCKRSKCLKLYCECFAAGVYCVDSCACENCYNKPE 475
                     89**********************************975 PP
2TCR43.56.5e-14522561140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+gCnCkkskClkkYCeC++a++ Cs+ C+Ce C+N+ 
  XP_015872098.1 522 RHKRGCNCKKSKCLKKYCECYQAQVGCSDGCRCECCQNSF 561
                     589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.6E-15435476IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.907436562IPR005172CRC domain
PfamPF036382.4E-11438473IPR005172CRC domain
SMARTSM011147.3E-14522563IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.2E-10524560IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MDHSPEPNRI PTTLSSPSFS SPAVQESPFF NYASNLSPIK SAKATRYAKR FLEINLSTPP  60
PVFTSPRIDM QREDSFPGRD EMVEAGVEDS KNSADLGLRP DNEVPQLLTS GFTSPNETIT  120
EVEDLDRTAE VRALMLSDQA AENQPSSSLK LVESTVDQRD NGKVKEDISD FTFEKDESDI  180
NVDLVSGEQN CGGHGAQEAS QHHRGICRHL QFEAAMAYNG STSTNSNSLC GLTDDTKNVR  240
SPDSLSNLKN LVPFQYEMEA SNGQQSVNHV QSMPPQFPSC PFEMLNSSQN CGNAIMSSTI  300
PYGTGFHMNN IGLSDMFANE KLHGHPNSQE RLMPDMANAL GKDLHSSFSN GVGDVHSHMN  360
NDQPGSQSVM EDNNVPSHTS DHVNPLGNPM HLALIEQHAA PCDGSIYASQ DTEMVEESKQ  420
LSPKRRRKRS AYMTEGCKRC NCKRSKCLKL YCECFAAGVY CVDSCACENC YNKPEFEDTV  480
MDTRQQIESR NPLAFAPRVV KHATDSPANV TEEGNWTPSS ARHKRGCNCK KSKCLKKYCE  540
CYQAQVGCSD GCRCECCQNS FGKKSETIYK RAEKWDTFSN ENIDALKSGV DYIKAETRNA  600
NQVAQTWEPL ADITNITPLS HTSSGVWESS SSNFRDYSKV SGVQLRPGIR FQSSAPSSIN  660
WNCSPDRLMA QFSDTQASHC LSSNAAFYGL IDNDTPQILK ENSTPCKAVK RAEKWDTFSN  720
ENIDALKSGV DYIKAETRNA NQVAQTWEPL ADITNITPLS HTSSGVWESS SSNFRDYSKV  780
SGVQLRPGIR FQSSAPSSIN WNCSPDRLMA QFSDTQASHC LSSNAAFYGL IDTPTPQILK  840
ENSTPCKAVK AIGGERTNVI IAYDRFSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1643855912120Protein lin-54 homolog
5fd3_B7e-1643855912120Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872098.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024927239.10.0CRC domain-containing protein TSO1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142771417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.15e-65Tesmin/TSO1-like CXC domain-containing protein