PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015872063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 378aa MW: 43372.4 Da PI: 9.4924 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.4 | 8.4e-16 | 28 | 119 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ ps + l +p kf++++g + s t++ ++gr+W++ l +k +++++ +GW+eFv+ + +++g f++F ++g s+f +v XP_015872063.1 28 FFKIIYPSILAD-QKLEIPSKFVKKFGDE--LSEVATVTVSNGRTWQLGL--KKAERAILFVDGWQEFVEYHSIDSGYFLLFGYQGFSKF--NVC 115 677775555555.55**********9865..77789999999********..********************************987888..999 PP EE-S CS B3 96 vfrk 99 +f+k XP_015872063.1 116 IFDK 119 9998 PP | |||||||
2 | B3 | 45.7 | 1.2e-14 | 281 | 356 | 14 | 90 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 + + +p +f+ +++ + +s + +++ +g++W++k+++r++++ +++GW+ F ++ +LkegD++vF+l++++++ XP_015872063.1 281 SFVDVPGEFVMKYMRS--CSEFINIQSINGKQWQMKCRFRNGRSLvKRISGGWSAFKNEFNLKEGDICVFELIKQKGT 356 347899****999866..8889***************9977765558899**********************996655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 22 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-20 | 24 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.42E-14 | 27 | 118 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 27 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-13 | 28 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 28 | 119 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-19 | 263 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-17 | 263 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.77E-17 | 267 | 357 | No hit | No description |
PROSITE profile | PS50863 | 11.392 | 268 | 366 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-13 | 269 | 361 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-12 | 272 | 356 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MAAKPWDRRE NVAGSGYTKQ RSGPPSHFFK IIYPSILADQ KLEIPSKFVK KFGDELSEVA 60 TVTVSNGRTW QLGLKKAERA ILFVDGWQEF VEYHSIDSGY FLLFGYQGFS KFNVCIFDKT 120 ATEIDYPCHG RSSNKQYSEN VEQVVADDDH DEISEQYTDQ QDGGRKRKKL DKRVTSLKCK 180 AAKRSKNCEL EGQAEQVGLG DANRTTRGKM KIENGTHCSH DLSANDEDEE ELMIISKSFY 240 RCRRKPVMSK ETERAFHAAR TCKHTHPCFL VLLRKRNVAC SFVDVPGEFV MKYMRSCSEF 300 INIQSINGKQ WQMKCRFRNG RSLVKRISGG WSAFKNEFNL KEGDICVFEL IKQKGTLLRA 360 SIYHAADYAD PVKKRLKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-19 | 243 | 369 | 23 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-19 | 243 | 369 | 23 | 146 | B3 domain-containing transcription factor VRN1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 168 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015872063.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015872063.1 | 0.0 | B3 domain-containing transcription factor VRN1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-52 | B3 family protein |