PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872016.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family BES1
Protein Properties Length: 343aa    MW: 38128.6 Da    PI: 5.3005
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822139.33.8e-43802211135
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasas 89 
                     gg++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++   +g +p    ++a +  ss+ + 
  XP_015872016.1  80 GGGRRCRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPsrsQGPRPAavnSTAVTSSSSHMVP 174
                     68999****************************************************************96555555556422222333333344 PP

          DUF822  90 pesslq.sslkssalaspvesysaspksssfpspssldsislasaas 135
                     +++++   + ++s  +  ve  ++  k + +p  s +d  +++ ++s
  XP_015872016.1 175 QQTPTAsIRGVNSGYRNSVEYNACHIKGVYVPNASPYDLSTSTRSQS 221
                     55555556678889999999999999999999999999877664433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.9E-3981215IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.26E-25262342IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.9E-30265342IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.3E-14271342IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-8302316IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-8323341IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MATDMQKLIG TSEEDDEEEM EMDVKEEDDD DDEEDGEKHV AATQVMVGID GGMPTSSSSN  60
NNRFQQHQQI QEQVGTPGGG GGRRCRPLEE KERTKLRERH RRAITARILA GLRRHGNYNL  120
RVRADINDVI SALAREAGWV VLPDGTTFPS RSQGPRPAAV NSTAVTSSSS HMVPQQTPTA  180
SIRGVNSGYR NSVEYNACHI KGVYVPNASP YDLSTSTRSQ SSSMVRDGGE QTEIHPLISG  240
SMDTVDDKQM VEIPQKSPER DFSGTPYIPV YVMLPLGVVN MKCELVDPDG LLKQLRVLKS  300
VNVDGVVVDC WWGIVEAHAP QEYNWNGYKR LFQMVRETKL KLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A3e-222673431187BETA-AMYLASE
1byb_A3e-222673431187BETA-AMYLASE
1byc_A3e-222673431187BETA-AMYLASE
1byd_A3e-222673431187BETA-AMYLASE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4422562e-53AM442256.2 Vitis vinifera contig VV78X202994.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868825.10.0beta-amylase 7 isoform X2
RefseqXP_024925898.10.0beta-amylase 7-like
SwissprotO808311e-133BAM7_ARATH; Beta-amylase 7
TrEMBLA0A2P5F2Q71e-177A0A2P5F2Q7_TREOI; Beta-amylase
STRINGXP_010105937.11e-178(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1985345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-102beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]