PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871797.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 360aa    MW: 40279.1 Da    PI: 8.334
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.45.4e-4097173278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v++C+adls+++eyh+rh+vCe hsk+p+v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  XP_015871797.1  97 CLVDDCKADLSSCREYHKRHRVCERHSKTPTVMVKGEEKRFCQQCSRFHALGEFDEVKRSCRKRLDGHNRRRRKSQP 173
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3190158IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.00994171IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-3795176IPR004333Transcription factor, SBP-box
PfamPF031101.2E-2997170IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEWDLKEFAW ESTHELDQQK EESDLTAMVE FSTSKKQTTT TTVNGSSGDL KLTVVDSAEP  60
VSFSKSNEAR TTSILASSPT SPGPSSKKVN GAQKVSCLVD DCKADLSSCR EYHKRHRVCE  120
RHSKTPTVMV KGEEKRFCQQ CSRFHALGEF DEVKRSCRKR LDGHNRRRRK SQPESLLFTS  180
KSFLSSAYKG PKILHFGSPP QIYAPTATTT MRNGSEPFVY GRQQRNRPPD FSNGRDTQFF  240
FLQENHPEKS NQATPEAFLC DYPILNTIKG QTEKVPNEVS TGGCALYLLS SNPSSLQIPA  300
GMDVNHHLVQ SNDQMHQSSL QFPNSFSAFD HGKDKPQNMI LRMGPDGLLE HVGAPQAFPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-25971701184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871797.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024925868.10.0squamosa promoter-binding-like protein 13A isoform X4
RefseqXP_024925870.10.0squamosa promoter-binding-like protein 13A isoform X4
RefseqXP_024925872.10.0squamosa promoter-binding-like protein 13A isoform X4
TrEMBLA0A2P5FC861e-112A0A2P5FC86_TREOI; SBP-box transcription factor
STRINGXP_010112387.15e-89(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-40SBP family protein