PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 407aa MW: 43348 Da PI: 9.2543 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.3 | 5.2e-13 | 26 | 50 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ XP_015871714.1 26 EPVCQYYLKTGTCKFGASCKFHHPK 50 789********************96 PP | |||||||
2 | zf-CCCH | 36.8 | 6.6e-12 | 71 | 96 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ XP_015871714.1 71 GETECSYYLKTGQCKFGITCKFHHPQ 96 7789********************97 PP | |||||||
3 | zf-CCCH | 35.3 | 2e-11 | 228 | 254 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG CkyG++C+++H++ XP_015871714.1 228 PGEPECQYYIKTGDCKYGSSCRYHHPR 254 5799*********************96 PP | |||||||
4 | zf-CCCH | 35.2 | 2.2e-11 | 275 | 300 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C f++++G+Ck+G++CkF H++ XP_015871714.1 275 GVQVCTFYLQNGHCKFGSTCKFDHPM 300 5678********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.4E-7 | 23 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 23 | 51 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 26 | 50 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 26 | 50 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 28 | 50 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 71 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 72 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 75 | 95 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-5 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-8 | 229 | 254 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 232 | 256 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 233 | 254 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-7 | 275 | 304 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-9 | 275 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 277 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
YNHPRDRAAV AAAVRATGEY PERVGEPVCQ YYLKTGTCKF GASCKFHHPK HGGGSLSQAP 60 LNIYGYPLRP GETECSYYLK TGQCKFGITC KFHHPQPAGT SVSASAPQFY PTVQSPSVPM 120 PEQYPGASTS LRVARPPLLP GSYVQGAYGP MLFPPGVVPL HGWSPYSAPV SPVLSPGAAQ 180 PPVAATSLYG VTQLSSSSPA LARPFPSLPS SIGASSSSPK EQAFPERPGE PECQYYIKTG 240 DCKYGSSCRY HHPRDRVVPR TNCLLSPIGL PLRPGVQVCT FYLQNGHCKF GSTCKFDHPM 300 GNMRYNPSAS SLIDMPVTPY PVGNLLGTLA PSSTSSELRP ELISGSKKES YSTRMPSSAN 360 TSSSSVGLIF SQTGSVSLSE VQLSSQSSVP LSSSRSTRQG GEVRRSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871714.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871714.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like, partial | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | M5VMU1 | 0.0 | M5VMU1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235007.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |