PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 23497.7 Da PI: 7.4996 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.4e-08 | 54 | 101 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L ++l + + K +K +iL A++ +++L XP_015871359.1 54 TKACREKLRREKLNDRFLDLSSVLEPG---KPIKTDKPAILDDAMRVLNQL 101 6789**********************8...8999*************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.03E-13 | 43 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.13E-7 | 48 | 106 | No hit | No description |
PROSITE profile | PS50888 | 12.487 | 50 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.5E-6 | 54 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-10 | 56 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-8 | 56 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MESLDPSYWY WDDYSLIDDS QSANFLWADQ RGLEKYEFLT RKRGRSDSCS RPGTKACREK 60 LRREKLNDRF LDLSSVLEPG KPIKTDKPAI LDDAMRVLNQ LKNEAQELRE TNEKLLEEIK 120 SLKAEKTELR EEKLVLKADK ERMEQQLKAS TIPPSGFMPA HPAAYQNKMP IYPSYGLIPM 180 WHYLPPSARD TSRDHELRPP AA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871359.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871359.1 | 1e-147 | transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 3e-83 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A2P5ECT2 | 1e-96 | A0A2P5ECT2_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_006489748.1 | 3e-94 | (Citrus sinensis) | ||||
STRING | XP_006420195.1 | 3e-94 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 9e-86 | bHLH family protein |