PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 671aa MW: 77393.9 Da PI: 5.6164

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015870629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.8e-22	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH ++ XP_015870629.1 60 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSKRWRIIEVELEHNHLIS 142 9*************99997.66779**********99888.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-19	60	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.0E-31	263	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.396	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.1E-4	550	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0039	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MDEVSLNTEP VGDDDADGFE IEGDCAMTDY VGQSGIIQGE NPLPPVVGME FESYDDVYYF 60 YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMDSKRWRI IEVELEHNHL ISPASGKFYK SHKNVGLGTK RTLQLDGPEE VQKIRLFRTV 180 IVDAEANGSI DVDVQESGNN VDYSNQLKLK EGDAHAVQNF FCRLQLMDPN FFYVVDLNEK 240 GCLRNLFWAD ARTRAAYSYF GDVVSIDTTC LSNKYEVPLV SFIGVNHHGQ SVLLGCGLLA 300 GETTESYTWF FRAWLTCMLG RPPQAIITDR CVILQAAIAD VFPRASHCLC LSHIMQKVPE 360 KLEGLFEYEA IQVALNRAVY HSMKTEDFEA VWEDMIQHHG IGDHKWLQAL YEDRKRWVPV 420 YLKEVFLAGM FPIEPSEVVS SFFEVYLEKH TPLKEFLDKY DQSLQTHYHL EALADLDSRN 480 SSFMLKSRCY FELQLSKLYT NDILRKFGKE VEGMYSCLCT RQLNVDGPII TYIVKEQIEV 540 EGHSRETRDY EVFYNPSDME VLCVCGIFNF RGYLCRHSMA VLSQNGMEEI PPQYILSRWR 600 KDIHRNYVVE HGNRGIDINN PVHRYDHLYK CTVQVVEEGR KSEDRYKVAL QALDEIMNKL 660 RITEEDDGQM A

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MDEVSLNTEP VGDDDADGFE IEGDCAMTDY VGQSGIIQGE NPLPPVVGME FESYDDVYYF  60
YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMDSKRWRI IEVELEHNHL ISPASGKFYK SHKNVGLGTK RTLQLDGPEE VQKIRLFRTV  180
IVDAEANGSI DVDVQESGNN VDYSNQLKLK EGDAHAVQNF FCRLQLMDPN FFYVVDLNEK  240
GCLRNLFWAD ARTRAAYSYF GDVVSIDTTC LSNKYEVPLV SFIGVNHHGQ SVLLGCGLLA  300
GETTESYTWF FRAWLTCMLG RPPQAIITDR CVILQAAIAD VFPRASHCLC LSHIMQKVPE  360
KLEGLFEYEA IQVALNRAVY HSMKTEDFEA VWEDMIQHHG IGDHKWLQAL YEDRKRWVPV  420
YLKEVFLAGM FPIEPSEVVS SFFEVYLEKH TPLKEFLDKY DQSLQTHYHL EALADLDSRN  480
SSFMLKSRCY FELQLSKLYT NDILRKFGKE VEGMYSCLCT RQLNVDGPII TYIVKEQIEV  540
EGHSRETRDY EVFYNPSDME VLCVCGIFNF RGYLCRHSMA VLSQNGMEEI PPQYILSRWR  600
KDIHRNYVVE HGNRGIDINN PVHRYDHLYK CTVQVVEEGR KSEDRYKVAL QALDEIMNKL  660
RITEEDDGQM A

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015870629.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015870221.2	0.0	uncharacterized protein LOC107407447
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2N9FVB8	0.0	A0A2N9FVB8_FAGSY; Uncharacterized protein
STRING	XP_008228718.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]