PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015870581.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

WRKY

Protein Properties

Length: 579aa MW: 62496.7 Da PI: 8.3624

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015870581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	2.9e-30	229	288	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+ XP_015870581.1 229 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSILTTTYEGTHNHP 288 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-31	214	290	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-27	222	290	IPR003657	WRKY domain
PROSITE profile	PS50811	27.875	224	290	IPR003657	WRKY domain
SMART	SM00774	3.0E-36	229	289	IPR003657	WRKY domain
Pfam	PF03106	7.6E-27	230	288	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MMFKQVPSNT TGIESSSMER DSMVSSSSRK EQDEQLVSTR AEMGEVREEN QRLKMYLDRI 60 MKDYQTLQMQ FYGIVQHEAK KSTTTSEAIS KNHQQETDQE AELISLRLGS FSSITNYYPK 120 KDEKNKASSD HGKETSSTTD HQVEEGLALG LDCKFEPSKS SGATDQGPLS NPSPASSFEE 180 TNKEEARETW PPPNKSLTAK RSTDDEVSQQ SPAKKARVSV RARCDTPTMN DGCQWRKYGQ 240 KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC ADDMSILTTT YEGTHNHPLP ISATAMASTT 300 SAAASMLLSA STTSSSRSVL NPLSATTTPA DLHGLNFYLS GNSNLKQFYL PNAPLSSTSH 360 PTITLDLTSN PSSSSLFNKF SPNYPPLYSS STSLNFGSSE SNLMSWSNNG FLSYGTSNSQ 420 PYNNSRTQIG NLSLGRQSGT STSTMQQQNN VFQNFLQKNG NNAVPHNPRP QGSILLPQQA 480 LPDTLAAATK AITADPSFQS ALAAALSTII GTQGNHGGGG GGSYVQTTKG NNGCASSYLN 540 RTTSNLQPGN SMFASSSSLP FSNSKSGSAS SGDHREQTN

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MMFKQVPSNT TGIESSSMER DSMVSSSSRK EQDEQLVSTR AEMGEVREEN QRLKMYLDRI  60
MKDYQTLQMQ FYGIVQHEAK KSTTTSEAIS KNHQQETDQE AELISLRLGS FSSITNYYPK  120
KDEKNKASSD HGKETSSTTD HQVEEGLALG LDCKFEPSKS SGATDQGPLS NPSPASSFEE  180
TNKEEARETW PPPNKSLTAK RSTDDEVSQQ SPAKKARVSV RARCDTPTMN DGCQWRKYGQ  240
KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC ADDMSILTTT YEGTHNHPLP ISATAMASTT  300
SAAASMLLSA STTSSSRSVL NPLSATTTPA DLHGLNFYLS GNSNLKQFYL PNAPLSSTSH  360
PTITLDLTSN PSSSSLFNKF SPNYPPLYSS STSLNFGSSE SNLMSWSNNG FLSYGTSNSQ  420
PYNNSRTQIG NLSLGRQSGT STSTMQQQNN VFQNFLQKNG NNAVPHNPRP QGSILLPQQA  480
LPDTLAAATK AITADPSFQS ALAAALSTII GTQGNHGGGG GGSYVQTTKG NNGCASSYLN  540
RTTSNLQPGN SMFASSSSLP FSNSKSGSAS SGDHREQTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	216	290	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015870581.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015870581.1	0.0	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-120	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A061G420	1e-179	A0A061G420_THECC; WRKY DNA-binding protein 72, putative
STRING	EOY21754	1e-179	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-82	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]