PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870343.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 357aa    MW: 40695.4 Da    PI: 8.774
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-1910101199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+  +s++lk ++l +pkkf++++g++   s   t++ +sgrsW++ l  +k  gr+++ +GW+eFv+ + +  g f+vF+++g s+f  +v 
  XP_015870343.1  10 FFKII-SSSTLKDQNLKIPKKFVKKFGNE--LSAIATITIPSGRSWKLGL--QKAEGRILFVDGWQEFVEYHSIGFGYFLVFRYEGFSKF--HVC 97 
                     66766.888999999********999855..888999999**********..********************************987888..*** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_015870343.1  98 IFDK 101
                     **98 PP
2B347.43.4e-15252337490
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     vl+++++lk+    +p +fa+++++   +s  +++e  +g++W +k++  +++ +   +++GW  F ++n+LkegD++vF+l++++++
  XP_015870343.1 252 VLLSKYNLKNYYADVPAEFATKYMQR--GSGFIKVEAFNGKKWWLKCRTlNGTASVKRISQGWAAFKNDNNLKEGDVCVFELIKQKGT 337
                     67789999999999*********744..6678***************88555665589************************986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-244102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-234102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-189100No hitNo description
PROSITE profilePS5086314.2839102IPR003340B3 DNA binding domain
PfamPF023622.4E-1610101IPR003340B3 DNA binding domain
SMARTSM010191.1E-1810102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-18243335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18245340IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-13248338No hitNo description
PROSITE profilePS5086312.605249347IPR003340B3 DNA binding domain
SMARTSM010197.3E-7250342IPR003340B3 DNA binding domain
PfamPF023628.1E-13252337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MKSSYSPSHF FKIISSSTLK DQNLKIPKKF VKKFGNELSA IATITIPSGR SWKLGLQKAE  60
GRILFVDGWQ EFVEYHSIGF GYFLVFRYEG FSKFHVCIFD KTATEIDYPS NCLSRADVEP  120
NFDKQGSEDH EEEAADDDDY EILEHQRVGN KRKKLCQRAT SLKCKVARGG KNCKFEGQAD  180
QVGIGAEDIS MGGKVEENEM DCPQDLPSTD EDEPMFFSRF FFCPKTKPMT KESERAMLAA  240
RNCKRKHPSF LVLLSKYNLK NYYADVPAEF ATKYMQRGSG FIKVEAFNGK KWWLKCRTLN  300
GTASVKRISQ GWAAFKNDNN LKEGDVCVFE LIKQKGTLLR ASVYHAADYA DPVKKHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1623135030146B3 domain-containing transcription factor VRN1
4i1k_B1e-1623135030146B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870343.20.0B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-50B3 family protein