PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015870221.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 667aa MW: 77186.3 Da PI: 8.6638

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015870221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69	1.2e-21	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++ +w++ ++ leHnH l XP_015870221.1 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSTRWRILEVTLEHNHLL 143 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-18	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-32	262	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	549	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-6	560	587	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MEEVSLSGEQ VLDGECSLIQ KDRNGVVAEL DSQNGATEGR KEFVPPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLVDSTRW RILEVTLEHN HLLGAKIYKS IKKMGSGTKR KSQSSSDAEV RTIKLYRALV 180 IDAGGNGTSN SNTREIDVFS GHPNRLNLKK GDTQAIYNYF CRMQLTNPNF FYLMDLNNEG 240 RLRNVFWIDA RSRAACGYFS DVLYFDNTYL SNKFEIPLVA FVGINHHGQS VLLGCGLLAA 300 ETAESYVWLF KAWLTCVSGR SPQTIVTDRC KALQSAIAEV FPRCHHRFGL SHIMKKVPEK 360 LGGLRNYDAI RKALVKAVYE SLKVIEFEAA WGFMIQRFGV GDHEWLRSLY EDRVWWVPVY 420 LKDTFFAGMS AARPGETLNP FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRNL 480 NPTLKTRCSF ELQLSKVFTK EIFKKFQFEV EEMYSCFSTT QLHVDGPIII FLVKERVTGE 540 ANRREIRDFE VLCNRTAGEV RCICSCFNFH GYLCRHALCV LNFNGVEEIP SRYVLSRWKK 600 DYKRLYIHDH ASNNVDITDR VQWFNQLYRS ALQIVEEGVI SLEHYKVALQ TFEESLNRVH 660 DVEVKHE

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MEEVSLSGEQ VLDGECSLIQ KDRNGVVAEL DSQNGATEGR KEFVPPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSTRW RILEVTLEHN HLLGAKIYKS IKKMGSGTKR KSQSSSDAEV RTIKLYRALV  180
IDAGGNGTSN SNTREIDVFS GHPNRLNLKK GDTQAIYNYF CRMQLTNPNF FYLMDLNNEG  240
RLRNVFWIDA RSRAACGYFS DVLYFDNTYL SNKFEIPLVA FVGINHHGQS VLLGCGLLAA  300
ETAESYVWLF KAWLTCVSGR SPQTIVTDRC KALQSAIAEV FPRCHHRFGL SHIMKKVPEK  360
LGGLRNYDAI RKALVKAVYE SLKVIEFEAA WGFMIQRFGV GDHEWLRSLY EDRVWWVPVY  420
LKDTFFAGMS AARPGETLNP FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRNL  480
NPTLKTRCSF ELQLSKVFTK EIFKKFQFEV EEMYSCFSTT QLHVDGPIII FLVKERVTGE  540
ANRREIRDFE VLCNRTAGEV RCICSCFNFH GYLCRHALCV LNFNGVEEIP SRYVLSRWKK  600
DYKRLYIHDH ASNNVDITDR VQWFNQLYRS ALQIVEEGVI SLEHYKVALQ TFEESLNRVH  660
DVEVKHE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015870221.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015870221.2	0.0	uncharacterized protein LOC107407447
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	F6HXG3	0.0	F6HXG3_VITVI; Uncharacterized protein
STRING	XP_008228719.1	0.0	(Prunus mume)
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]