PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869924.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 143aa    MW: 15898.2 Da    PI: 9.1205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-0533721054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  XP_015869924.1 33 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMEYIQFL 72
                    778899999999******999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.36E-52177No hitNo description
Gene3DG3DSA:4.10.280.109.5E-112291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-132287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.2142372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-42978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MTEHKRGPCS VDQTSLTSLA SKRQKAEFSI SNKERKEKLG ERIVALQQLV SPYGKTDTAS  60
VLLEAMEYIQ FLHEQVKVLS APYLQSSPTA KMQELELYSL RSRGLCLVPV SSTIGVDSSN  120
GADIWAPIKT TSPKFEKSIS HFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868969.11e-102transcription factor bHLH153-like isoform X1
RefseqXP_015868985.11e-102transcription factor bHLH153-like isoform X3
RefseqXP_015869909.11e-102transcription factor bHLH153-like isoform X1
RefseqXP_015869924.11e-102transcription factor bHLH153-like isoform X3
SwissprotQ7XJU25e-61BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A314UD516e-85A0A314UD51_PRUYE; Transcription factor bHLH113 isoform X2
TrEMBLA0A314ZKI91e-84A0A314ZKI9_PRUYE; Transcription factor bHLH113 isoform X1
STRINGXP_008222500.12e-85(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-63bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]