PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869619.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 374aa    MW: 41119.5 Da    PI: 4.9817
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.5e-34197255159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++dp++v++tYeg+H+h+
  XP_015869619.1 197 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHTHP 255
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-36182257IPR003657WRKY domain
SuperFamilySSF1182902.75E-30189257IPR003657WRKY domain
PROSITE profilePS5081133.591192257IPR003657WRKY domain
SMARTSM007741.3E-41197256IPR003657WRKY domain
PfamPF031066.0E-28198255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDMKEEEVKT ENSMAIFSDE IPMNNFSFSG IFDMPCEAAE KDPLGGFMDL LGIRHDHFPP  60
SHDLFDLPSL TTTTTTTTTS SFSAAAPTSI AALMSSSMTM TMTMPAQPLP SPSPPSSTVL  120
PETSEVLNTT PTTPNSSSIS SSSNDDQTKP LQEEEGDADQ QDQEKTTHKQ LKPKKKNQKR  180
QREPRFAFMT KSEVDQLDDG YRWRKYGQKA VKNSPYPRSY YRCTSAGCGV KKRVERSSDD  240
PSIVVTTYEG QHTHPSPATP RGSIGIAPME SGGFVPPAAT SPSPFVIPQL PNYQQQQQHS  300
FIYSSPPSLN ISSSTTGFSP SSSSSSSFPA FVQERHNYNY IPSSASLLRD YGLLEDLVST  360
QMRSTEQRDG DMID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-281902581078Probable WRKY transcription factor 4
2lex_A1e-281902581078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867168.10.0probable WRKY transcription factor 48
RefseqXP_015869619.10.0probable WRKY transcription factor 48
RefseqXP_015869627.10.0probable WRKY transcription factor 48
RefseqXP_024924545.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ41e-55WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLD9ZJG14e-99D9ZJG1_MALDO; WRKY domain class transcription factor
STRINGXP_009372109.11e-102(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.18e-47WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]