PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015869261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 182aa MW: 20405.1 Da PI: 10.36 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.3 | 2.4e-12 | 1 | 58 | 36 | 99 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +tledesg+++e + +k+ + l++GW+ F+ +++L++gD +vF+l++ ++f +v ++r+ XP_015869261.1 1 MTLEDESGQEFEAIY--IGKRTG--LSGGWRAFALDHKLDDGDALVFELIEPTRF--KVYIIRA 58 689************..555544..************************986777..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.52 | 1 | 59 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-12 | 1 | 59 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.86E-15 | 1 | 57 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-13 | 1 | 59 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.1E-10 | 1 | 58 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MTLEDESGQE FEAIYIGKRT GLSGGWRAFA LDHKLDDGDA LVFELIEPTR FKVYIIRASM 60 VSGGECDTKM HDKENTTERK RKSKVDMKLR SQSNQAKKKT TKASISKNDD SKSLPELSAK 120 CPIGNEIKQE RNPTEKNGCA SQKLEKKGRG EVNESNIVGD GDKGLTRKPR RKPASRSFRK 180 RA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015869261.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869261.1 | 1e-132 | putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A2P5DHU6 | 2e-50 | A0A2P5DHU6_PARAD; B3 DNA binding domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12433 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 2e-22 | B3 family protein |