PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868974.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 186aa    MW: 20985.6 Da    PI: 10.1256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-091968654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + +Er+RR +++   ++L +l+P+  +k+++  ls  + L  A  YIk+L
  XP_015868974.1 19 KTVERNRRIHMKGLCFKLASLIPPhHFKPSKDMLSQQDQLNVAACYIKQL 68
                    679*********************888877777****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.00E-41173No hitNo description
PROSITE profilePS508889.1851368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-91881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-91881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-61968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVRTMKNSSS SESLKLDRKT VERNRRIHMK GLCFKLASLI PPHHFKPSKD MLSQQDQLNV  60
AACYIKQLSE KIEKMKLKKE AAIKAKEASN GNFNIDAINM IGIRLPVIEL KDLGSSIEVI  120
LISGLKKNFM LYEVISVLEE EGAEVVSASF STVGDKVFHS VHAQVKISRV GVETSRVWQR  180
LQDLIY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868974.11e-134transcription factor bHLH162-like
TrEMBLA0A314YDE32e-89A0A314YDE3_PRUYE; Uncharacterized protein
STRINGVIT_17s0000g08150.t014e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-27bHLH family protein