PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HSF

Protein Properties

Length: 470aa MW: 53060.8 Da PI: 5.6235

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015868967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.5	1.1e-33	18	108	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d++++e++sws+ ++sfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++ XP_015868967.1 18 FLLKTYDMVDDSSTDEIVSWSSVKTSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIKDQKHLLKN 103 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_015868967.1 104 IHRRK 108 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.2E-59	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.44E-34	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.3E-36	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.6E-18	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-29	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-18	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-18	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MDGAQAAGSG SSGGPAPFLL KTYDMVDDSS TDEIVSWSSV KTSFVVWNPP EFARLLLPTF 60 FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIKDQKHL LKNIHRRKPI HSHSHPPGTL 120 VDPERAALDD EIEKLSREKA ALESNVSSFQ QQRSAAKLQL GDMLQRVSEM ERRQESLLNF 180 LEKAVQNPIF VERLARKIEA MDFTAYNKKR RLPEVDHPQP VLENNFVDNH ISSRAEFGNI 240 FHQDFSSKLR LELSPAVSDI NLVSHSTQSS NEDGESPHRK VSEGEFRGAQ RTEGLFFPAE 300 ALELSDTGTS FAFKMDSSLS RKSSTNGRPG LQLSQPNLPA NEEGEGRISC HLNLTLASTP 360 LQFNNSPYSA RMPQQGHETS EPQELNKNMH EEEKLLSSSQ EAAKTNQEPV AAPVKVNDVF 420 WEQFLTERPG CSENEEASSN YRANSYDEQD DRKLGHGISR NVKNVEQLSL

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MDGAQAAGSG SSGGPAPFLL KTYDMVDDSS TDEIVSWSSV KTSFVVWNPP EFARLLLPTF  60
FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIKDQKHL LKNIHRRKPI HSHSHPPGTL  120
VDPERAALDD EIEKLSREKA ALESNVSSFQ QQRSAAKLQL GDMLQRVSEM ERRQESLLNF  180
LEKAVQNPIF VERLARKIEA MDFTAYNKKR RLPEVDHPQP VLENNFVDNH ISSRAEFGNI  240
FHQDFSSKLR LELSPAVSDI NLVSHSTQSS NEDGESPHRK VSEGEFRGAQ RTEGLFFPAE  300
ALELSDTGTS FAFKMDSSLS RKSSTNGRPG LQLSQPNLPA NEEGEGRISC HLNLTLASTP  360
LQFNNSPYSA RMPQQGHETS EPQELNKNMH EEEKLLSSSQ EAAKTNQEPV AAPVKVNDVF  420
WEQFLTERPG CSENEEASSN YRANSYDEQD DRKLGHGISR NVKNVEQLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-20	7	107	19	129	Heat shock factor protein 1
5d5v_B	4e-20	7	107	19	129	Heat shock factor protein 1
5d5v_D	4e-20	7	107	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015868967.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015868967.1	0.0	heat stress transcription factor A-5
Refseq	XP_015870139.1	0.0	heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-170	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A251QYG7	0.0	A0A251QYG7_PRUPE; Uncharacterized protein
STRING	XP_008222805.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-172	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]