PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868886.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 404aa    MW: 45202.3 Da    PI: 7.1341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29218278259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqKe+ gs+fprsYYrCt++   +Cp+kk+v+r ++dp ++e++Y+g+H+++
  XP_015868886.1 218 EDGFTWRKYGQKEIMGSKFPRSYYRCTHQklyQCPAKKQVQRLDDDPYTFEVIYRGNHTCH 278
                     7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-27213279IPR003657WRKY domain
SuperFamilySSF1182901.44E-25215279IPR003657WRKY domain
SMARTSM007741.1E-36217279IPR003657WRKY domain
PfamPF031061.5E-26218278IPR003657WRKY domain
PROSITE profilePS5081120.357218280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEENRNPPKS YHFFHPFKSP NISTRFKSNI HHQKKQKQDN ISMEETVSLI LEGCKLAKDL  60
ESNLENLSKQ PHLLFNSCDH LVKVFDNAKK RLQCTYDRPH EQQQPQHLQM DASLQEWLQS  120
NYTQAMDLLQ TQLLVERSSI DTANRMRNNA GDDHDEQLQG GGNLNVPAMD VTVFPGGSLA  180
GPSSSSSSQR PRKRKESMDI RIERMDAPRI GNTEIPPEDG FTWRKYGQKE IMGSKFPRSY  240
YRCTHQKLYQ CPAKKQVQRL DDDPYTFEVI YRGNHTCHMS ATAPSALPPQ QQPVPSEITQ  300
GMSQLAMTTT SSTSASTTAF PLGRSWLSME FGRGGGGSSS SGAGTSTGRY GKEAEDAVID  360
LADVMFNSGG SSSNTMDFIF PSIDKWDSES GDKKDTDNAN TKKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18218277968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868886.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868886.10.0WRKY transcription factor 55-like
TrEMBLW9RLF31e-100W9RLF3_9ROSA; WRKY transcription factor 55
STRINGXP_010103665.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-56WRKY DNA-binding protein 55