PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868749.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 191aa    MW: 21064.8 Da    PI: 6.5181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12960255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                    r+  + +Er+RR++++  +++L +l+P++   +s+   s  + L +A +YIk+Lq
  XP_015868749.1  9 RTDRKTIERNRRNQMKVLYSKLNSLVPHQ---NSREvTSLTDQLDEAANYIKKLQ 60
                    778899**********************9...88888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-6564No hitNo description
SuperFamilySSF474591.57E-12574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.376759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-8960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-41365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDHNPSSSRT DRKTIERNRR NQMKVLYSKL NSLVPHQNSR EVTSLTDQLD EAANYIKKLQ  60
TSLERMKEKK DSLMGIERSS NNAGGMMISS NSTSCGGVAA GVKSPQIEIH IIGSALEIVL  120
ITGLDFQFMF NETIRVLHEE GADIINASFS VVEDSVFHTI HSKIEESTLG PGAAARISER  180
LNKFIDDASG L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868749.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868749.11e-139transcription factor bHLH162 isoform X2
SwissprotF4JIJ77e-46BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A251PFV93e-88A0A251PFV9_PRUPE; Uncharacterized protein
TrEMBLA0A3N7EG368e-88A0A3N7EG36_POPTR; Uncharacterized protein
STRINGXP_008225174.11e-88(Prunus mume)
STRINGPOPTR_0011s05320.12e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-48bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]