PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868192.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 266aa    MW: 30128.9 Da    PI: 5.4118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.2e-11195242455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_015868192.1 195 SHSLAERVRREKINERMKFLQDLVPGC----DKITGKALMLDEIINYVQSLQ 242
                     8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-17190258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-11190246No hitNo description
PROSITE profilePS5088815.713191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-18193259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-8195242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDGGDEYYHQ TKVVVSSEDV GIDHDHQMAL WSSSSGAAND SLTMLGTIWD LHGMYLPPPP  60
PPPPLPPSMA SYSRLIDQQT SNFFDQKVTK QPCLFTEMGR IRLQSGFDNI APLQNQQNYS  120
SHERPPNCDA YQLIKQKAKC EEEEEEEEEN EEKQKADHTI TIGTSRCGEV MGKQGKREAL  180
KEGQGRSKAG QSMSSHSLAE RVRREKINER MKFLQDLVPG CDKITGKALM LDEIINYVQS  240
LQRQVEFLSM KLATVHPEMK PDVQRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868192.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868192.10.0transcription factor bHLH62-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3703422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-39bHLH family protein