PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015867594.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25273.7 Da PI: 8.947 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.1 | 1.1e-41 | 47 | 145 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++gvi++lq+ql++l+ael+ XP_015867594.1 47 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLQSLQAELN 141 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_015867594.1 142 AIRT 145 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.624 | 46 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-42 | 47 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSRDRERLED EIGKKIRGSE ISTVSANSQM GRRISFAPPG TLNTITPCAA CKLLRRRCAE 60 ECPFSPYFSP HEPQKFAAVH KVFGASNVSK LLMEVPESQR ADAANSLVYE ANLRLRDPVY 120 GCMGVISALQ HQLQSLQAEL NAIRTDILKY KYREAATHIV SSSLVSPGVV SIAAPPQAIS 180 PSPPPPRPPP PPPRPPSSVV ISSSSTSSTS SLYTPSTTTT GYSSLSSDNV PYFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-45 | 37 | 154 | 1 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-45 | 37 | 154 | 1 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015867594.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015867594.1 | 1e-169 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 2e-76 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2P5AZ88 | 6e-97 | A0A2P5AZ88_PARAD; Lateral organ boundaries domain containing protein | ||||
STRING | VIT_06s0004g07790.t01 | 2e-96 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 3e-71 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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